KEGG   Bipolaris oryzae: COCMIDRAFT_95288
Entry
COCMIDRAFT_95288  CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
bor  Bipolaris oryzae
Pathway
bor03013  Nucleocytoplasmic transport
bor03015  mRNA surveillance pathway
bor03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCMIDRAFT_95288
  09122 Translation
   03013 Nucleocytoplasmic transport
    COCMIDRAFT_95288
   03015 mRNA surveillance pathway
    COCMIDRAFT_95288
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bor03019]
    COCMIDRAFT_95288
   03041 Spliceosome [BR:bor03041]
    COCMIDRAFT_95288
Messenger RNA biogenesis [BR:bor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     COCMIDRAFT_95288
    TREX complex
     COCMIDRAFT_95288
Spliceosome [BR:bor03041]
 Complex C
  Other components
   EJC/TREX
    COCMIDRAFT_95288
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    COCMIDRAFT_95288
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded RRM_PARP14_3
Other DBs
NCBI-GeneID: 19128623
NCBI-ProteinID: XP_007687958
JGI: Cocmi1_95288
UniProt: W6Z6Z6
LinkDB
Position
Unknown
AA seq 253 aa
MSSNKMEQSLDDILKASKTSRRGRSSRRSGAGRPAAAPAPVGGVAKSTKQAKPAKAAPAA
PAVILAGETKIMVSNLPRDIDQVQLQDYFASAINVGRPKKVLLQYDAAGRSVGSATIIFN
KHDQAAKATAALDGVKIDGRPVRVEMLVSPSAIPAAARPASLADRVTQPKKDKPKPATTE
KAAAGATRGRGQTRGRGKGRGGRDARPKKKTVEELDAEMADYFPGGETSNAASGAEVAQV
TAGGDTAMDDEML
NT seq 762 nt   +upstreamnt  +downstreamnt
atgtcgtcaaacaagatggagcagagcctcgacgacatcctcaaggcatccaagacttct
cgccgtggccgcagcagtcgccgttccggcgcgggacgcccagccgccgctccagctcct
gttggcggtgttgcaaagtccaccaagcaagccaagcccgccaaggctgcgcctgccgca
cccgccgtcatcctggccggcgagacaaagatcatggtatccaacttgccaagggacatt
gaccaagtccaacttcaggattactttgcttcagcaatcaacgtaggtcgaccaaagaag
gttctcctccagtacgatgctgctggtcgtagcgttggtagcgcaaccatcattttcaac
aagcacgatcaagctgctaaggctactgctgctctggacggtgttaagattgacgggcgc
cctgttcgcgttgagatgctcgtcagccctagcgcaatcccggctgctgcacgcccagct
tccctcgccgatcgcgttacccaacccaagaaggataagcccaagcccgccactacggaa
aaggctgctgctggtgccactcgtggacgtggacagacccgtggacgcggaaagggccgc
ggcggtcgtgacgcacgcccaaagaagaagaccgttgaggagctggatgctgagatggcc
gactacttccccggaggtgagaccagcaacgctgccagtggcgctgaagtcgcccaggtt
accgccggcggtgacactgccatggatgatgagatgctctaa

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