Bipolaris oryzae: COCMIDRAFT_95288
Help
Entry
COCMIDRAFT_95288 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
bor
Bipolaris oryzae
Pathway
bor03013
Nucleocytoplasmic transport
bor03015
mRNA surveillance pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_95288
09122 Translation
03013 Nucleocytoplasmic transport
COCMIDRAFT_95288
03015 mRNA surveillance pathway
COCMIDRAFT_95288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_95288
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_95288
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
COCMIDRAFT_95288
TREX complex
COCMIDRAFT_95288
Spliceosome [BR:
bor03041
]
Complex C
Other components
EJC/TREX
COCMIDRAFT_95288
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
COCMIDRAFT_95288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
19128623
NCBI-ProteinID:
XP_007687958
JGI:
Cocmi1_95288
UniProt:
W6Z6Z6
LinkDB
All DBs
Position
Unknown
AA seq
253 aa
AA seq
DB search
MSSNKMEQSLDDILKASKTSRRGRSSRRSGAGRPAAAPAPVGGVAKSTKQAKPAKAAPAA
PAVILAGETKIMVSNLPRDIDQVQLQDYFASAINVGRPKKVLLQYDAAGRSVGSATIIFN
KHDQAAKATAALDGVKIDGRPVRVEMLVSPSAIPAAARPASLADRVTQPKKDKPKPATTE
KAAAGATRGRGQTRGRGKGRGGRDARPKKKTVEELDAEMADYFPGGETSNAASGAEVAQV
TAGGDTAMDDEML
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaacaagatggagcagagcctcgacgacatcctcaaggcatccaagacttct
cgccgtggccgcagcagtcgccgttccggcgcgggacgcccagccgccgctccagctcct
gttggcggtgttgcaaagtccaccaagcaagccaagcccgccaaggctgcgcctgccgca
cccgccgtcatcctggccggcgagacaaagatcatggtatccaacttgccaagggacatt
gaccaagtccaacttcaggattactttgcttcagcaatcaacgtaggtcgaccaaagaag
gttctcctccagtacgatgctgctggtcgtagcgttggtagcgcaaccatcattttcaac
aagcacgatcaagctgctaaggctactgctgctctggacggtgttaagattgacgggcgc
cctgttcgcgttgagatgctcgtcagccctagcgcaatcccggctgctgcacgcccagct
tccctcgccgatcgcgttacccaacccaagaaggataagcccaagcccgccactacggaa
aaggctgctgctggtgccactcgtggacgtggacagacccgtggacgcggaaagggccgc
ggcggtcgtgacgcacgcccaaagaagaagaccgttgaggagctggatgctgagatggcc
gactacttccccggaggtgagaccagcaacgctgccagtggcgctgaagtcgcccaggtt
accgccggcggtgacactgccatggatgatgagatgctctaa
DBGET
integrated database retrieval system