Bipolaris oryzae: COCMIDRAFT_96897
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Entry
COCMIDRAFT_96897 CDS
T03125
Name
(RefSeq) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bor
Bipolaris oryzae
Pathway
bor00040
Pentose and glucuronate interconversions
bor01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
COCMIDRAFT_96897
Enzymes [BR:
bor01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
COCMIDRAFT_96897
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
19128938
NCBI-ProteinID:
XP_007688563
JGI:
Cocmi1_96897
UniProt:
W6Z4R4
LinkDB
All DBs
Position
Unknown
AA seq
334 aa
AA seq
DB search
MKLSALSFLSFALSATAAPTGSDFSLVGFAKDNPIGPTTGGQSKDGKSVTVETLADFVKA
VTSTEPLVVYAKGNFNLTSRVQVQSNKSLIGLGKGAQITGNGLNIYNKTNVIIRNFGFTA
TADDAMTIRNSTRIWIDHNEFTTGNFPALGPDAFDGQVDIIRASDWITVSWNYFHDHWKS
SLVGNSDAFRDIDQGHLHVTYHHNYWRHEGTRGPAGRFGHQHVYNNLFVDFLYQAIHSRS
DNQVLVEGNVFKGDTREALSTYGLVIPQDSPNTSPDGDYEIDGFANLGAKNDFGKAGVNI
TQVGNFTQAPYKYNLTPLSKVEDVVKKGAGLGKI
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgaagctatcggccctctcattcctttcctttgcgctatctgcgaccgcagcgcctaca
ggctccgacttcagtctggtgggattcgcaaaagataacccaattggtccaacaactggt
ggacaatccaaggatggaaaaagcgtcactgtagagactttggccgacttcgtcaaggca
gtaacgagcaccgagcctcttgtagtttacgccaagggcaacttcaacctcacctcgcga
gttcaagtccaatccaacaagtcgctcattggccttggaaaaggcgctcaaatcacaggc
aatggcctcaacatctacaacaagaccaatgtcatcatccgcaactttggcttcacagct
actgccgacgacgccatgacaatccgcaacagcacgcgcatctggatcgatcacaacgaa
ttcactactggtaacttccccgcgctaggccccgatgcattcgacggtcaagtcgacatc
atccgcgcttcagattggatcaccgtatcctggaactatttccacgaccactggaagagc
tccttggtaggcaacagcgacgccttccgcgacatcgaccaaggccacctccacgtcacc
taccaccacaactactggcgccacgaaggaacacgcggccccgccggccgcttcggccac
cagcacgtctacaacaacctcttcgttgacttcctctaccaagccatccactcacgaagc
gacaaccaagttctcgtcgagggcaacgtattcaaaggagatacgcgcgaggcactcagc
acatacggtcttgttatcccacaagacagcccaaacactagccccgatggcgactatgag
attgatggctttgcgaacttgggcgcgaagaacgatttcggaaaggcgggcgtgaatatt
acccaagttggaaattttacacaggcgccgtataagtataaccttacgccgttgagcaag
gtggaggatgttgttaagaagggcgctggtttgggtaagatttaa
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