Bipolaris oryzae: COCMIDRAFT_9843
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Entry
COCMIDRAFT_9843 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bor03009
]
COCMIDRAFT_9843
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_9843
Ribosome biogenesis [BR:
bor03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCMIDRAFT_9843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
DUF3843
Motif
Other DBs
NCBI-GeneID:
19129265
NCBI-ProteinID:
XP_007693232
JGI:
Cocmi1_9843
UniProt:
W6YRK3
LinkDB
All DBs
Position
Unknown
AA seq
641 aa
AA seq
DB search
MAPQAKMDRSFGALTPALSEWILEAVDSMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSG
KTLAFLIPIVERLLRLDAPIKKHHVGAIIISPTRELATQIYTVLASLLRFHAPSAALLDP
GDEDTDMEDADAPSKPTFPPGTLRVVPQLLLGGSVTPAQDLSRFLKSSTNVLIGTPGRLL
ELLSSPHVHCSQSSFDALVLDEADRLLDLGFKDDLQKILSRLPKQRRTGLFSASVSEAVD
QLIRVGLRNPVRIAVKVKARAANSATGEAGAIEDKRTPASLQMSYLAMPASHKLPAIKKL
LASLQSQPQKSIMYLATCYSVDYFQHVLPEVLKGYAIVPMHGKHPDKVRRRNFNKFVDSM
TPSILLTTDVAARGLDIPSVDLVLQLDAPSDPKTFIHRCGRAGRAGRKGLAVTFLNPGRE
EDYIEFLRVRQTPISPLATPKIEISDEEAQATSNKIRKVVKSDRALFDKAQRGFVSWVRA
YSKHTASSIFRIPDLDWTEQGHAWGLLKLPSMPELKKWDGDRSLGVSFDFTTYAYKDKAR
EQQRQTEQAEYEATKAEGKKKKYVPEDKKAAAWTHQKDLKALKELRREKKTAKREHERVA
AMTEEERKEDERLKGMIAQVRKRVAEKEAQDEGDEFEGFSD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctcaggcgaagatggatcgctcttttggagccctgaccccagctctatcggaa
tggattcttgaagcggtcgattccatgggctttgtgaaaaccacgccggtgcaacacgcg
gctattcccatgttcatgaagaactcggatgttgtggtcgaggctgtcactggaagtgga
aaaaccctagcttttcttattcctatcgtcgagcggttattgcgactggatgcgcccata
aaaaagcatcacgtgggcgccataatcatatcgccaaccagagaactagcaacccagatt
tacacagttctagcttcccttcttagatttcacgccccctcggcagccttgctggacccg
ggagatgaagataccgacatggaagatgccgacgctccatccaagccaacctttccacca
ggaaccctgagagttgttcctcagttgctcctaggtggctcagtcacgccagcacaagat
ctaagcagattcctgaaatcatcaaccaacgttctcatcggtacccctggtcgccttctc
gaactcctctcctcgccacacgtccattgctcacaatcgtcctttgatgctcttgtactt
gacgaggccgatcgactcctggatcttggcttcaaggatgacctccagaaaatcctttct
cgtctacccaagcaacgccgaacaggtctcttcagtgcaagtgtcagtgaggcagtcgac
caactcattcgcgtcggcctccgaaatccagtccgtatagccgtcaaggtcaaggcccga
gccgccaacagtgcgacaggtgaggctggcgcgatagaggacaagaggacacctgcgagt
ttgcaaatgtcataccttgccatgcctgcgtctcacaaacttccagccatcaagaaacta
ctcgcgtccttgcagtcacagcctcaaaagtcaataatgtatttggcgacatgttattcc
gttgattacttccaacacgtcctaccagaagtccttaaggggtatgccattgttccaatg
catggcaagcaccccgacaaggtccgccgtagaaatttcaacaagtttgttgatagcatg
acaccaagcattctcttaaccacagatgtagcagctcgaggtctcgacataccttcagtc
gatctagtcctgcaactcgacgcaccaagtgaccccaagacctttatccaccgttgtggt
cgcgccggtcgagctggccgcaaaggtctggctgtaacctttctcaacccaggccgcgaa
gaagactacatcgaattcctccgggtccgacaaacaccaatatcacctctagccaccccg
aaaatcgaaatctcagacgaagaagcccaggcaacaagcaacaagataagaaaggtggtc
aaatccgaccgagcactattcgacaaagcccaacgcggcttcgtctcctgggtccgcgca
tacagcaaacacacagccagctccatcttccgcatcccggacctcgactggaccgaacaa
ggccacgcatggggcctcctcaagctgcccagcatgcccgagctcaaaaaatgggacggc
gaccgcagtctcggcgtcagctttgacttcaccacctacgcatacaaagacaaagcccgc
gagcagcaacgccagaccgagcaggccgaatacgaggctaccaaggctgaaggaaagaaa
aagaaatatgtgccagaagataagaaggcggcggcttggacccaccagaaggatttgaag
gcgctgaaagagttgaggagggagaagaagacggcaaagcgcgagcatgagcgtgtggct
gctatgacggaggaggagcgcaaggaggatgagaggttgaagggtatgattgcccaggtg
aggaagagggtggcggagaaggaggcgcaggatgagggagatgagtttgaggggtttagc
gattga
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