Bipolaris oryzae: COCMIDRAFT_98550
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Entry
COCMIDRAFT_98550 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_98550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_98550
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCMIDRAFT_98550
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCMIDRAFT_98550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
GDH_HM1
Motif
Other DBs
NCBI-GeneID:
19129287
NCBI-ProteinID:
XP_007689211
JGI:
Cocmi1_98550
UniProt:
W6ZL41
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MFQAQQNQGRGAPLGANRLQNGKMGGGSQWGFGAPMGAPGLSNAQTRTNNGAMSSFAQAM
GGSQPHTPLNLEEFPSLSGAPQTQQNTSAQQMWANPTLRTTQQNQQNTIGRPQGQGQQQG
QGQAGQASNQQHQNQGQDDSSQSQFSGAGDDYRFGGQGGVGQLGGVQPQTGNIDEFPPLG
GGGGDIAPDRRAGLIQNAAAFGTNVNAFPGLGQTRNGLSSPTDSQQDRGINPTVGGRGLP
GGASRTPFENMRTGNPSDSNQRTAQSGNTFSLGHQIGMRGGSDLAPGAQRAQQGQFEQTF
GADAMGSPNAQSMPHKKLSEMTDSERYGLPGLLSMIPMESPDYSTLAMGQDLTVLGLDLS
RPDNLPLHPTFGSPFVESNVKPVIPPDFTLPAAYTVTNVPPLHSKMTSFSAETLLAIFYQ
YPRDILQEIAAQELYNRDWRWHIKLQQWMMKDPDLPAPIRLSPKEERGWYLFFDVNNWRR
ERREFELNYDHLDQRHGSPAMTGQM
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagcacaacagaatcagggccgcggggctcccctaggcgcgaaccggttacaa
aacggaaagatgggaggcgggtctcaatggggatttggagcccccatgggcgcaccagga
ctatcaaacgcgcaaacaaggacaaacaacggcgccatgtcgagctttgcgcaagcaatg
ggtggttcacagccccacacgccgctgaatctcgaggagttcccctcattatcaggtgca
ccacaaacacagcaaaatacgtctgcgcaacagatgtgggcaaacccgacgctacgaaca
acacagcagaatcagcaaaacacgataggaaggccacaaggacaaggccaacagcaaggt
cagggacaggctgggcaagcttcgaatcagcaacatcagaatcagggccaggacgattcg
tcgcaaagccagttttcgggagccggcgatgactaccgattcggcggacaggggggtgtc
ggtcaactcggaggcgttcagccgcagacgggtaacattgacgagtttccaccgttaggt
ggcggtggcggcgacattgccccagatcgaagagcggggttgatacagaatgctgcagca
tttggtaccaatgtgaatgctttcccagggctcggacaaacacggaatggcctttcaagt
ccgacggacagccagcaagatcggggcatcaatcccactgtgggtggaagagggcttccc
ggtggagcatcgcgaacgccattcgagaatatgcgaaccggcaacccttcagatagcaac
caacggacagcccagtctggtaacacgttctccctgggtcaccagataggaatgcggggc
ggtagtgaccttgctccgggcgcccaacgggctcagcaaggccagttcgagcaaacattt
ggggctgatgctatgggctcaccaaatgctcagagtatgccgcacaagaagctatccgag
atgaccgactcagaacgatatggactgcccggacttttgtctatgattccaatggagagt
cccgattactccaccctagccatgggccaagatttgactgttctgggcttggatttgagt
cgacctgacaacttgccactacatccgacatttggttcaccctttgtcgaatcaaacgtc
aagccagtaataccgccagatttcaccctgccagcagcgtacacagtgacaaatgtgccg
ccactccattctaagatgacgagtttctcagcagagactctcctcgccatcttctaccag
tacccaagagacatccttcaggaaattgccgcacaagaactatacaaccgcgactggcga
tggcatatcaagctccagcagtggatgatgaaggacccagatctcccagcgcccatccgt
ctctcaccaaaggaagaacgcggctggtacctcttctttgacgtcaacaactggaggaga
gagaggagagagttcgaactcaactatgatcacctcgatcaacgccacggcagccctgca
atgacgggacagatgtag
DBGET
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