Bipolaris oryzae: COCMIDRAFT_98561
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Entry
COCMIDRAFT_98561 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
bor
Bipolaris oryzae
Pathway
bor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCMIDRAFT_98561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_98561
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_98561
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
COCMIDRAFT_98561
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
COCMIDRAFT_98561
U7-dependent histone pre-mRNA processing factors
COCMIDRAFT_98561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
19129289
NCBI-ProteinID:
XP_007689194
JGI:
Cocmi1_98561
UniProt:
W6Z9T6
LinkDB
All DBs
Position
Unknown
AA seq
753 aa
AA seq
DB search
MTSQTIQQMESARSLALGDGRYYPTIIPGVLPIIGYSEDQSIEIQRWGAEFLAEAFASPA
WPQEAKQSSAPSVLATLKAYLENVDDKSVIKSAIQAAASVYPLVYKHTVSDPSDSQNWGL
MFGIKANILRRMDSAAPGVRICCVKFLQQVVLVQTPGVADPRRADHNDISLSIVPRDHPL
IPYASLEAEGHGLLDRLLDIIHGDHSDGLLVTATLNSLGMLIHRRPNAANKILNSVFNFN
PLKLANSPMTPKNKVIIKSIERTTRALLVNIMKRNPENPINGRIQQFLERMHRARVEFFE
ESNRKRPAPAEPTDGLDHAKRQRLVAEPPSRTPSVQPLPPGPISWRQLYTLNSEGSTANF
DVQNFKDPEQLVRIVVPVLQSVNPQKLEQAISAVRARYQTLRQNAASQPVQPPSAPAAED
EEEYEPDFEPEDAEQIMNKLDGIPSNPFPTQQGPSTALAPFKLPEAPPLSDQDVQKYGDM
TVQRAFGMLSSVDETQKSKATKGGFNRLAATDYSRDAWVTILSRLATRASAGLDDPTDGI
KDEYAVKSTRSSNPRISDSIRDSLYQYILYDWKRRIDVAISWLNEEWYNDMILAQSAETP
LPNGTVNGISPSKPPRGNYHRCALRLIDGILPYIEHTDKILLRFLSEIPSIDYTLLVRLK
KMAEDPERIDLACNALHYLYMFRPPVRKIVVDVLAEMWAENERAKPSARKLLLRWRPEVL
GSEMAGNNTTQLVVKTESGVDNAAGKVEVGAAS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgcaaacgatacagcagatggagtcggcccggtcgctcgcgttaggcgacggt
agatactatcctaccattataccgggcgtgctccccatcatcggttacagtgaagaccag
agcatcgagatacagcgttggggtgccgagtttttggcagaggctttcgcatcgccagca
tggccccaagaggccaagcagagcagcgcgccctcggtgctggctaccctcaaggcctac
ctggagaatgtcgatgacaagagcgtcatcaagagtgccatccaggcggccgcgagcgtg
tatccacttgtatacaaacatactgtctccgaccccagcgattcgcaaaactggggcctc
atgtttggcatcaaagcaaacattttgcgacgaatggactcggccgcccctggcgtgcgt
atatgctgcgtcaagttcctccaacaagtcgtcctggtacagacaccaggtgtggcagac
cctaggcgcgccgatcacaacgacatttccctctccattgtgccccgcgatcatccgctt
ataccgtatgcgagcctcgaggctgaaggacatggactactggacaggctgttggatatc
atacatggggatcacagtgacggattgctcgtgactgccaccttgaacagcttgggcatg
ctgatccatcgccgaccaaatgctgcaaataaaatcttgaacagtgtcttcaacttcaac
cccttgaagcttgccaattcgccaatgacgcctaagaacaaggtcattattaagtcaatt
gagcgtacaacaagggcactactcgtcaacatcatgaagaggaaccccgagaacccaatc
aatgggcgcatacaacagtttctggaacgcatgcatcgtgcccgtgtggagttttttgag
gaatccaaccgtaaacggccagcacccgctgaaccgaccgatggccttgatcacgccaag
agacagcgacttgtggctgagcctcccagtcgtacaccctctgttcagcctctaccgcct
ggtccaatcagctggcgacaattatacacgctcaattctgagggcagtactgcaaatttt
gatgtgcaaaatttcaaggatcctgagcagttggtcaggattgtggtgccagtcctgcag
tcggttaacccgcaaaagcttgaacaagcaatcagtgctgtccgtgctcggtatcaaaca
ctgcggcagaacgctgcgagtcaacctgttcagccaccaagcgctcccgccgcagaagat
gaggaggaatatgagcccgactttgaacctgaagatgcggagcaaatcatgaacaagctt
gacggtatcccgtcgaatcccttcccaacccaacaaggcccatccactgctctagcaccc
ttcaagctgcccgaagcacctccattatccgatcaggatgtccagaagtacggtgacatg
accgtacaacgcgccttcggcatgctgagtagtgtagatgagacacaaaagagcaaggcc
acaaaaggtggttttaaccgtctagcagcaacagactacagccgcgacgcctgggtcacc
atcctctcccgcctcgccacacgcgcaagcgccggtctcgacgaccccaccgatggtatc
aaagacgagtacgcggtcaaaagcacccgcagcagcaacccccgaatcagcgactccatc
cgcgactccctgtaccagtacatcctctacgactggaaacgccgtatcgacgtcgcaatc
tcctggctcaacgaagaatggtacaacgacatgatcctcgctcaatccgccgagaccccc
ttacccaacggcacagtaaacggcatttccccttctaaacccccaagaggcaactaccac
cgctgtgccctccgcctcatcgacggtatcctcccttacatcgagcacacggataaaatc
ctcctgcgttttctctccgaaatcccttcaatagactacacgctccttgttcgcctcaag
aaaatggcagaggaccccgagcgcatcgatctcgcttgcaacgctctacactacctgtac
atgtttcgtcctcctgtccgcaagatcgtcgttgatgtcctcgcggagatgtgggcggag
aacgagcgagcaaaacccagtgcacgcaagttgctacttagatggaggccagaggttctg
ggtagcgagatggcgggcaacaacacaacgcagttggtagttaaaactgagagcggtgtg
gacaatgctgcgggtaaggtggaagttggggctgcgtcgtga
DBGET
integrated database retrieval system
