Bipolaris oryzae: COCMIDRAFT_99050
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Entry
COCMIDRAFT_99050 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K10756
replication factor C subunit 3/5
Organism
bor
Bipolaris oryzae
Pathway
bor03030
DNA replication
bor03410
Base excision repair
bor03420
Nucleotide excision repair
bor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCMIDRAFT_99050
03410 Base excision repair
COCMIDRAFT_99050
03420 Nucleotide excision repair
COCMIDRAFT_99050
03430 Mismatch repair
COCMIDRAFT_99050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bor03032
]
COCMIDRAFT_99050
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_99050
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_99050
DNA replication proteins [BR:
bor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
COCMIDRAFT_99050
DNA Replication Termination Factors
ELG1-RFC complex
COCMIDRAFT_99050
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
COCMIDRAFT_99050
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
COCMIDRAFT_99050
Check point factors
HRAD17(Rad24)-RFC complex
COCMIDRAFT_99050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_16
Rad17
RCF1-5-like_lid
AAA_5
AAA_24
AAA_assoc_2
DUF815
AAA_22
AAA_30
AAA_11
AAA_19
RuvB_N
AAA_3
Mg_chelatase
AAA_14
DEAD
ResIII
SLFN-g3_helicase
Sigma54_activat
PhoH
AAA_28
bpMoxR
AAA_18
AAA_7
ATPase_2
AAA_25
nSTAND3
DNAX_ATPase_lid
RNA_helicase
ABC_tran
UvrD-helicase
DO-GTPase1
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
19129388
NCBI-ProteinID:
XP_007689370
JGI:
Cocmi1_99050
UniProt:
W6Z303
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MSDIEDEMDVDAPVDKSISFGGDSKKGKRSAANLPVEAEDTLPCLHRVEKYRPASLDDVE
GHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDD
RGIEVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLDEADAMTSTAQMALRRIMEKY
TANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKVIEEEKVNITQDATDSL
VTLSKGDMRRALNVLQACHASSTPLQSPGKPAVDPSSIVRDQITQTTIYDCIAAPHPSDI
KYIIETLLSKNDMTECLRTINNLKTLKGLALADILTAISEELVANDVPPQVMVTWMSGLA
DIEYRLSGGGSEAIQTGAAIGVVRTGVELLENGKR
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattgaagatgaaatggacgttgatgcgcctgtcgacaagtccatcagcttt
ggcggagactcgaaaaagggcaagcggagcgccgccaatctgcctgtagaagctgaagac
acattgccatgtttgcatagggtagaaaagtaccgaccagcgtctctcgacgacgtagaa
ggccacaaagacatcatagccacaatcaacaaattcgtcgactcgaaccgattaccacat
cttctcctctatggacctcccggaaccggaaagacatctaccgtcctggcactcgcacga
cgcatatacggaaacaagaatatgcggcagatggttctcgaactaaacgcatcagacgac
agaggtatcgaggtagtcagagagcagattaagacattcagcagtaccaagcaaatcttc
tctgccgcacccaaagcaggagactcctcgctagcaactttcaaactcattgttctcgat
gaagccgacgccatgacttccaccgcccagatggcactgagacgaatcatggagaagtac
acggcaaacacacgtttctgcatcattgcaaactatacacacaaactctcacccgcactg
ctctcgcgttgtacgagatttcgattttcgccgctcaaggaccaggatattaggcatcta
gtcgacaaagtgatcgaggaggagaaagtaaacattacacaagacgccaccgattcgctt
gtcactctgagcaagggagatatgagacgagcactcaacgtgttacaagcctgccacgct
tccagcacgccactccagtccccaggcaagcccgcggtcgacccaagttcaattgtgcgt
gaccaaatcactcaaaccaccatctacgactgtatagcagccccgcatccttccgacatc
aagtacattatcgaaactttgctgtcaaagaatgacatgacagagtgtctacggaccata
aacaatctcaagaccttgaagggactggcgcttgcagatattctaacggcgattagcgaa
gagctggtcgcaaatgatgtgccgccacaagttatggtgacatggatgtcaggtttggca
gatattgagtatagactaagtggaggcggtagtgaagcgatccagactggtgcagctatt
ggtgttgtaaggaccggggtggagcttctggagaacggcaagaggtga
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