Entry |
|
Symbol |
rpoB
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Name |
(GenBank) DNA-directed RNA polymerase subunit beta
|
KO |
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Organism |
borr Borrelia sp. A-FGy1
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:borr00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F0310_01880 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:borr03021]
F0310_01880 (rpoB)
03400 DNA repair and recombination proteins [BR:borr03400]
F0310_01880 (rpoB)
Enzymes [BR:borr01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F0310_01880 (rpoB)
Transcription machinery [BR:borr03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F0310_01880 (rpoB)
DNA repair and recombination proteins [BR:borr03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F0310_01880 (rpoB)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
|
Position |
complement(400842..404309)
|
AA seq |
1155 aa
MIKRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKNKEPLLNEGLESVFRNVFPIK
SSNGEVALEYEKYYIEDDSLSFTEKECKRKGQSYEAVLKIRLNLQFLTTGEIRQKDVYLG
TIPLMTNRGTFIVNGAERVIVSQIHRSPGVVFYRERDLYFARIIPYRGSWLEFEIDSKKD
YLYVKIDRKKRILVTLFLRALGLDTREKIIDTFYKIRKIEVNEDTKREIAGQYLAVNINI
KENMTYRAGDKITLQDVEDFFQNGIKQIKLIDFDGYDSVPGKYFISSDIILNCFEKEDAY
FSLKDGFKELSRESVMLAVYNVLLPGEPISIDSAENDLRTVFFSEKRYDLGHVGRYKLSK
KFGLDDLTTSVLTMTDIVNTIAHLLRIYDGHDTLDDIDHLGNRRVRSVGELLTNIYKGAM
TRVEKIARDRMSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKR
RLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYARVNDYGFLE
TPYRKVVDGKVTHEIEYLSAIDEEKKSIAQANADVDADGNYIEDLISVRISGDYTTMVPK
NIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERVV
AKYSGVVIKARRAGTVILATNKKIIIRPSEANGASDLDEYYLSKYERTNQDTSFNQSVLV
KEGQEVSVGEIIADGPATRYGELALGNNLLVGFIPWNGFNYEDAILISERIVKEDLYTSI
HIKEFSIEVRETKLGPEKVTADIPNVSSKILSKLDENGIIIIGTYVKPGDILVGKVTPKS
EGDITPEFKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVGNLPPGVDEILK
VYIAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLSDGTPLDICLNPLGVPSRMNIGQ
LMESQLGLAGKYLGEYYDIPVFESATNEQIQENLRKAGFNETSKEILYDGYTGEQFENEV
MVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAH
TLQELLTVKSDDMSGRVKIYENIVKGIPTNVSGIPESFNVLLQELRGLGFDLSIYDDKGD
QVPLTEKEEELINKT |
NT seq |
3468 nt +upstreamnt +downstreamnt
atgataaaaagggttcatctaggacaaggcaaggcagaagaaattttagacttgcctaac
ctaattgaaatacaattgaattcttatgagaaatttttgcagcttgagagattaaaaaat
aaagaacctttgcttaatgagggacttgaatctgtttttagaaatgtttttcctataaaa
agtagtaatggtgaagttgctcttgagtatgagaaatactacattgaggatgattctctt
agttttacagagaaagaatgtaagaggaaaggacaaagctatgaggctgttttgaagata
aggttaaatttgcagtttttaacaacaggggaaataagacaaaaagatgtatacttgggt
accattcctttaatgaccaataggggtacttttattgtcaatggagcagagagggtaatt
gtatctcaaatacataggtctcctggggttgttttttatagggaaagggatttgtatttt
gctcgcattattccttatcgtggttcttggctagaatttgagattgattcaaaaaaagat
tacctttatgttaagatagataggaagaagagaatacttgttactcttttcttaagagcc
ttagggctagatactcgagagaaaataatagatactttttataaaattagaaaaattgag
gtaaatgaagatacaaaaagagaaattgcaggtcaatatttagccgtaaatattaatata
aaagaaaatatgacttatcgagctggtgataagataactttacaagatgttgaagatttt
tttcaaaatggaataaaacaaataaaacttattgattttgatggctatgatagtgttcct
ggaaaatattttattagttctgatattattttaaattgctttgaaaaagaagatgcttat
ttttctttaaaagatgggtttaaggaactttcacgggaatcagtgatgcttgctgtttat
aatgtacttttgcctggagaaccaatctctattgatagtgctgagaatgacttaagaaca
gtattcttctcagagaagagatatgatcttgggcatgtgggtcgatataagctttctaaa
aaatttggacttgatgatttaacaacttctgttcttactatgacagatattgtaaatact
atagctcatcttttaaggatatatgatggtcatgatactcttgatgatattgatcacctt
ggcaatagaagagttcgttctgttggtgaattacttacaaatatatataagggagcaatg
acaagagtagaaaaaattgcaagggatagaatgtctaataaagaggtatttaatcttaaa
cctcaggaattgataagtgttaaacctattgtttctgctgttaaggaattttttgcaact
agtcagctttcacagtttatggaccaagttaatcctttagctgaattaacacataaaagg
cgacttaatgctttgggtcctggaggactgtcaagagatcgtgcaggttttgaagtaaga
gatgttcactatactcattatggcaggatgtgtcctattgagactcctgaaggacctaat
atcggtcttattgtttctttagctacttatgctagagtaaatgattatggattcttagaa
actccttacagaaaagtggttgatgggaaggttactcatgaaatagaatatttgtctgca
attgatgaagaaaagaaaagtattgcacaggcaaatgctgatgttgatgctgatggtaac
tatattgaagatttaatttctgttaggatttctggtgattatactactatggttccaaaa
aatatagattatatggatgtttctcctaggcagttaatttctgtttcttctgcattaata
ccttttcttgaacataatgatgcgaaccgtgctcttatgggttcaaacatgcagaggcag
gcagtacctttattgtttccacagccacctattgttggtactggtatggaaagagtagtt
gctaaatattctggcgttgttattaaggcaaggagagcaggaacggtcatattggcaaca
aacaaaaaaataattataagacctagtgaagctaatggtgcttctgatttagatgaatat
tatctttctaaatatgagagaacaaatcaagatacttcttttaatcagtcagttttagtt
aaagagggccaagaggttagtgtgggtgaaataattgcagacggccctgctactagatac
ggtgaacttgctcttggaaataatttgctggttggctttattccttggaatggatttaat
tatgaagatgctatattaatatctgagagaattgtaaaagaagatctttatacttcaatt
cacattaaagagtttagtatcgaagtaagagaaactaagcttggacctgaaaaggtcacg
gcagatatccctaatgtaagttcgaagatattgagtaagttagatgaaaatggaattata
ataataggaacttatgtaaaaccaggtgatattttggttggtaaagttacgccaaagtca
gaaggagatattactcctgaatttaagcttttgacatctatttttggcgaaaaagcaaaa
gatgttaaaaataattcattgaaagttccgcatggtactgagggcactgtaattgatgta
caaaggataacaaaggatgatgttggaaatcttcccccgggggttgatgaaatattgaaa
gtttatattgctaagaaaagaaagcttaaagaaggggataaaatggctggaagacatgga
aataagggagtagttgcaaaaattcttcctgttgaagatatgccttatctttctgatgga
acgcctcttgatatatgtttaaaccccttaggggttccttctcgtatgaatattgggcaa
ttaatggaatcacagcttgggcttgctggcaaatatcttggtgagtattatgatattcct
gtttttgagtctgctacaaatgaacaaatacaggaaaatttaagaaaagctggatttaat
gaaacatcaaaggaaattttatatgatggatatacaggagaacagtttgaaaatgaggtt
atggttggagttatatatatgcttaagcttcatcaccttgttgatgataagatgcatgca
aggtctacaggcccttattcgcttgtttcacagcaacctcttggagggaaagctcaattt
ggagggcaaagacttggagaaatggaagtttgggcacttgaagcatatggggctgctcat
actctccaggagttgttaacagtaaaatcggatgacatgtcaggaagagttaaaatatat
gagaatattgttaagggcatacctactaatgtatctggaattcctgaatcttttaatgtt
ttgttgcaagagttaagagggctggggtttgatttgtcaatttatgacgataaaggagat
caagttcctttaacagagaaggaagaggaattaattaataaaacttag |