Borrelia sp. A-FGy1: F0310_03525
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Entry
F0310_03525 CDS
T10492
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
borr Borrelia sp. A-FGy1
Pathway
borr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
borr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F0310_03525 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
borr03021
]
F0310_03525 (rpoD)
Transcription machinery [BR:
borr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F0310_03525 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
FANCAA
Exonuc_VII_L
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QMU99460
UniProt:
A0A7D8ADI3
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Position
753803..755683
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AA seq
626 aa
AA seq
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MNSMENKDFQCFKKKNSKLIKAILDYLMGRKEITFGDLSNLLSEDMLEPENIDFIYGILE
DEGISLIDERVEAKNSNNSSELEEAAKMDSQFMVLGDSVDNDDKLDEFDDDILDKEDFSG
CIKSGLLKDNNTEDPIRLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKSEGLVIE
NYYNLVNAIYSRADREEFFKREKEREKDNNADYYNKKKRITSFYKTSLKPYQDRLVSYIE
NKHKLYELGEDIFEESINNERLYLKDMLKSVPLYQEELRIFSDDYIDSASKIRDLKRQQK
SILDRLKVDKIRNLRVLGRDLAIPERREKIEKFLNMREDLIKEQITEAQLAQKELERIEM
YYEYPIDRIIRMSEEILKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGN
IGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRY
LVQVLGKDPTDEELSVRLGWELKKVKTVKNVSREPVSLETPIGEEEDSVLSDFIEDKAIK
NPAKHTSFVVLQDQIRSILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQ
IESKALRRLKNPKKTQKLKDYLEDLN
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtatggaaaataaagattttcaatgttttaaaaagaaaaattcaaaattaata
aaagccatattggattatttgatgggtagaaaagagattacatttggagatttatctaat
ttgctttcagaggatatgttagagccggaaaacattgattttatttatggaatacttgag
gacgagggaataagtttgattgatgaaagagtagaagctaagaactctaataatagttct
gaattagaagaagcagctaaaatggatagtcaatttatggtcttaggtgattctgttgat
aatgacgataaattagatgaatttgatgatgatattttagacaaggaagatttttcaggg
tgtattaagagcggattattaaaagataacaatactgaagatccaataaggctttattta
aaagagataggaaaggaattcttgttaaccggaaatcaagaagttgagcttgcaaaacaa
atggattctggtgagtctattattgaaaacattcttaagagtgaaggacttgttatagag
aattattataatttggttaatgctatttattcaagagcagatagggaagaattttttaaa
agggaaaaggaaagagaaaaggataataatgctgactactataacaaaaaaaaaagaatc
acgtctttttataaaacttcattaaaaccatatcaggatcgtttagtaagttatattgaa
aataagcataaattatatgaacttggagaagatatttttgaggaaagtattaataatgaa
cggctttatttaaaagatatgcttaaatctgtacctttgtatcaagaagagttaaggatt
ttttcagatgattatattgactctgctagtaagataagggatttaaaaaggcagcagaag
tctatattagatagattaaaagtcgacaaaattaggaatcttagggttcttggaagagat
ttagctatacccgagaggcgggagaagatagaaaaatttttaaatatgagagaagatctt
attaaggaacagattacagaagctcagcttgctcaaaaggagcttgagagaattgagatg
tattatgaatatccaatagatagaataataaggatgtcagaagaaattcttaaaggtaag
cagatgatgcaacatgcaaaagatcagcttattaaagctaatttaagacttgttgtgagt
atcgccaagaagtatgcaaataggggtcttcatttttttgatcttgtgcaagagggtaat
attggtttaattaaggctgttgaaaaatttgaatataagagaggatttaagttttctact
tatgctacatggtggattcgtcaagcaataacaaggtcaatttcagatcaagcgcgcacg
atacgtgttcctgtgcatatgattgagcaaataaatagattgaatagagaaacaagatat
ttggttcaggttttaggtaaggacccaacagatgaggaactttcagttagacttggatgg
gaattaaagaaagttaagactgtcaaaaatgtttcaagagaacctgtatcacttgaaact
ccaattggggaagaggaggattctgttcttagtgattttattgaggacaaggcaataaag
aatccggcaaaacatacatcttttgtggttttacaagatcaaataagatcaattcttggt
actcttccagaaagagaacaggaagtagttaaaatgagatttgggcttgaagatggatat
tctttgactcttgaagaagttgggcttcattttaatgttacaagagaaaggattaggcag
attgaatctaaagctttaagaagacttaaaaatcctaaaaagacacaaaaacttaaagat
tatttagaagatttaaattaa
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