Bosea sp. 685: RMR04_16000
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Entry
RMR04_16000 CDS
T10282
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bose Bosea sp. 685
Brite
KEGG Orthology (KO) [BR:
bose00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bose03032
]
RMR04_16000 (topA)
03400 DNA repair and recombination proteins [BR:
bose03400
]
RMR04_16000 (topA)
Enzymes [BR:
bose01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RMR04_16000 (topA)
DNA replication proteins [BR:
bose03032
]
Prokaryotic type
DNA Topoisomerases
RMR04_16000 (topA)
DNA repair and recombination proteins [BR:
bose03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RMR04_16000 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WNJ93699
UniProt:
A0AA95ZL31
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All DBs
Position
3088374..3091055
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AA seq
893 aa
AA seq
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MKLLVVESPAKAKTINKYLGSDYEVIASFGHIRDLPAKDGSVEPEQDFAMKWEIEGRGAK
QVAEIVKALKGADKLILATDPDREGEAISWHVLEALNAKRALKGIPVERVTFNAVTKDAV
EKALANPRQVDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIVCDR
EREIEAFRAREYWSLVATLATSAGGVFDARLVGADGKKITRLDIGTGDEARAFKAALETA
AFNVANVEAKPVKRHPYPPFQTSTLQQEASRKLGLAPARTMQLAQRLYEGVDIGGETVGL
ITYMRTDGVDMDGSAITAARRVIGKEFGDAYVPGVPRKYTVKAKNAQEAHEAIRPTDLGR
LPAMVARHLEPEQARLYELIWKRTIASQMESASLERTTVDIAAKVSARNLELRATGQVVL
FDGFLTLYQESRDDEEDEDSKKLPAMKDGEPLEKRAIAADQHFTEPPPRYSEASLVKRME
ELGIGRPSTYAATLSTLRDREYVRIDKKRLVPEDKGMLVTAFLESFFKRYVEFDFTANLE
EQLDRVSNAEIDWKVLLREFWEEFTKSIGETKDLRVTEVLEALNGVLGAHVFPAREDGGD
PRSCQVCGTGTLSLKLGKFGAFVGCSNYPECRYTRPLTVSAADGEATTEGGQGAPGVRIL
GKDPVTEVDVTLRDGRFGPYIQLGEGEKPKRSSLPKGMSAASVTLEKALALLALPREVAK
HPESGEPILVGIGRYGPYVQHGKTYANIDKDDDILELGGNRAIDLIVAKESGGGGSRFGR
GAAVPGRDLGEHPGGGKLVVRAGKYGPYVNWGKVNATLPKTMTQEAITLEQAVELVNAKA
EASGVKGGGKPKAAAKAKAPAKAAVKSAAKPKATAKAKAPAKAAAKPKAAAKA
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcctcgtcgtcgagtcgccggccaaggccaagacgatcaacaaatatctcggc
tcggattacgaggtcatcgcctcgttcgggcatatccgcgacctgcccgccaaggacggc
tccgtcgagcctgagcaggacttcgcgatgaagtgggagattgaggggcgcggcgccaag
caggtcgccgagatcgtcaaggcgctgaaaggcgccgacaagctgatcctcgcaaccgac
ccggaccgcgagggcgaggccatctcctggcacgtgctggaagcgctgaacgccaagcgg
gcgctcaagggcattcccgtcgagcgcgtcacctttaacgccgtgaccaaggacgccgtg
gagaaggcgctggccaatccgcgccaggtcgaccaggcgctggtcgacgcctatctggcg
cgccgggcgctcgactatctcgtcggcttcaccctctccccagtgctctggcgcaaattg
cccggcgcgcgctcggccggccgcgtccagtcggtggcgctgcgcatcgtctgcgaccgc
gagcgcgagatcgaggccttccgggcccgcgaatactggtcgctggtggccacgctcgcc
accagcgcaggcggcgtcttcgacgcgcggctcgtcggagccgacggcaagaagatcacc
cggctcgacatcggcaccggcgacgaggcgcgcgccttcaaggcggcgctggagaccgcc
gccttcaacgtggcgaatgtcgaggccaagcccgtcaagcgccacccctatccgcccttc
cagacctcgaccttgcagcaggaggcctcgcgcaagctgggcctcgccccggcgcggacg
atgcaactggcgcagcggctctatgagggcgtcgacatcggcggcgagacggtcggcctc
atcacctatatgcgaaccgacggcgtcgacatggacggctcggccatcaccgccgcccga
cgcgtcatcggcaaggagttcggcgacgcctatgttcccggcgttccgcgcaaatacacg
gtcaaggccaagaacgcgcaggaggcccatgaggcgatccggccgaccgatctcggccgc
ctgcccgcaatggtggcgcgccatctcgaacccgagcaggcgcggctctacgagctgatc
tggaagcgcaccatcgccagccagatggaatcggcctcactcgaacgcaccacggtcgac
attgccgccaaggtcagcgcgcgcaatctggaactgcgcgccaccggccaggtcgtgctc
ttcgacggcttcctgacgctctatcaggagagccgtgacgacgaggaggacgaggactca
aagaagctgcctgcgatgaaggatggcgagccgctcgagaagcgcgccatcgcggccgac
cagcacttcacggagccgccgccgcgctattcggaggccagcctcgtcaaacgcatggaa
gagctcggcatcggccggccttcgacctatgccgcgacgctgtcgaccctgcgcgaccgc
gaatatgtccgcatcgataagaagcgcctcgtccccgaggacaagggcatgctggtgacg
gcgttcctggagagcttcttcaagcgctatgtcgagttcgacttcacggcgaatctcgag
gaacagctcgaccgggtctccaacgccgagatcgactggaaggtgctgctgcgcgaattc
tgggaagaattcaccaaatcgatcggcgaaaccaaggatctgcgcgtcaccgaggtgctg
gaggcactgaacggcgtgctcggcgcccatgttttcccggcgcgcgaggatggcggcgat
ccgcgctcctgccaggtttgcggcaccggtacgctctcgctcaagctcggcaagttcggc
gccttcgtcggctgttcgaactatccggaatgccgctacacccggccgctgaccgtctcc
gcggccgatggcgaagccacgactgagggcggccagggcgcgccgggcgtgcgcatcctc
ggcaaggatccggtcacggaggtcgatgtcacgctgcgggacggccgcttcgggccctat
atccagctcggcgagggtgagaagcccaagcgctccagcctgcccaaaggcatgagcgct
gccagcgtgacgctggagaaggccctggcgctgctggcgctgccaagggaggtcgcgaag
catcccgagagcggcgagccaatcctcgtcggcatcggccgctacgggccttacgtccag
catggcaagacctacgccaatatcgacaaggatgacgacatcctcgagctcggcggcaac
cgcgccatcgacctgatcgtcgccaaggagagcggcggcggtggcagccgtttcgggcgt
ggcgcagccgtgccggggcgcgacctcggtgagcatccgggcggcggcaagctcgtcgtc
cgcgccggcaaatacggcccttacgtcaactggggcaaggtcaacgcgaccctacccaag
acaatgacgcaggaggcgatcacgctcgaacaggcggtcgaactcgtcaacgccaaggcc
gaggccagcggcgtcaagggtggcgggaagcccaaagctgcggcgaaggcgaaggctccg
gccaaggctgccgtgaaatccgcagccaagccgaaagccactgcaaaggcaaaggcgcca
gccaaggcagcggctaaaccgaaagccgccgcgaaggcctga
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