Bosea sp. 685: RMR04_16930
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Entry
RMR04_16930 CDS
T10282
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bose Bosea sp. 685
Pathway
bose03410
Base excision repair
bose03430
Mismatch repair
bose03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bose00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RMR04_16930 (recJ)
03430 Mismatch repair
RMR04_16930 (recJ)
03440 Homologous recombination
RMR04_16930 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bose03400
]
RMR04_16930 (recJ)
DNA repair and recombination proteins [BR:
bose03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RMR04_16930 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RMR04_16930 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RMR04_16930 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WNJ88105
LinkDB
All DBs
Position
complement(3330058..3331863)
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AA seq
601 aa
AA seq
DB search
MSLIPQRLFLGVSHSVLGRPWRDRLDAAGLGRAEALAQLEGIPDTLSRLLAGRGVEPNEA
LGFLEPRLRDLLPDPATLTDMEAAAARLAEAAQRREKVAIFGDYDVDGACSAALLAGFLR
QAGAQPRIHIPDRLIEGYGPNSDAIRTLAGEGATLLVTVDCGTTSHEPLAEAQRLGLDVV
VLDHHQAPELLPPVAALVNPNRQDDLSGLGHLCAAGVVFLTLVALSRTLRRQGFWAGRAE
GEPDLLAALDLVALATVADVVPLKGLNRAFVRQGIAILRGRTRPGLAALMDVAGLDGPVQ
PWHLGFLLGPRINAGGRIGDAALGARLLLTEDEIEARSIATELNRLNQERQEIERQAVLE
ATAQADHALMSLPDQPVLMAASADWHPGIVGLVAARLKERFRRPAFALALNGEGGATGSG
RSVAGVDLGRAVREAVEAGLAVKGGGHAMAAGVTLAAGQASAFQAFLAERLAMQVAAAGE
AEALLIDAALSAGGANPRLLAEIDKAGPFGAGSPEPVFVFPSHRLVEAVEIGSGGHVRIK
LKSGDGATVGGIAFRVAQEPLGRALLAARGESVHLAATLTLNRWGGRESAELRVLDMARL
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcattccccagcgccttttccttggcgtgtcccactccgtgctcggccggccc
tggcgcgacaggctggacgctgcggggctcggtcgcgccgaggccctggcgcagctcgaa
ggcattcccgataccttgtcgcgcctgctcgccgggcgcggcgtcgagcccaatgaggcc
ttgggcttcctcgagccccgcctgcgcgatctcctgcccgatcccgcgacattgaccgat
atggaagctgccgccgcccgtctcgccgaggcggcgcagcggcgcgagaaggttgcgatc
ttcggcgattacgatgtcgacggcgcctgctcggcggccctgctcgcgggcttcctgcgc
caggctggcgcgcagccgcgcatccatatccccgaccgcttgatcgagggctatggtccc
aacagcgacgccatccgcacactggcaggcgaaggcgcgacgctattggtcacggtcgat
tgcggcacgaccagccatgagccgctggccgaggcgcaaaggctcgggctcgatgtcgtc
gtcctcgaccaccatcaggcgcccgagctgcttccgcccgtcgccgccctggtcaatccc
aaccggcaggacgatctctccgggctcggccatctctgcgcggcaggcgtcgtcttcctg
acgctcgtggccctcagccggacgctgcggcggcagggcttctgggcgggcagggcggag
ggcgagcccgatctgctggcggcgctggatctcgtggcgttggcgacggtggccgatgtc
gtgccgctcaagggtctcaaccgcgctttcgtgcgccagggcatcgccatcttgcggggg
cggacgcggccgggactggccgcgctgatggatgtcgcagggctggatggcccggtgcag
ccctggcatctcggctttctgctcggcccgcgcatcaatgccggtggccgcatcggcgat
gcggcgctgggggcgaggctcttgctgaccgaagacgagatcgaggcgcgcagcatcgcg
accgaactcaaccgattgaaccaggaacgtcaggagatcgagcggcaggcggtgctggaa
gccaccgcgcaggccgatcatgcgctgatgagcctgcccgaccagcccgtgctgatggcg
gcctctgccgattggcatcccggcatcgtcggcctcgtcgcagcaaggctgaaggagcgc
ttccggcgcccggccttcgcgctcgccttgaacggggagggcggcgcgactgggtcgggc
cgttcggtcgccggtgtcgatctcggccgtgccgtgcgcgaggcggtcgaggccgggctc
gcggtcaagggcggcggccacgccatggcggccggcgtgacgctggctgccgggcaggct
tccgctttccaggctttcctggccgagcggctggcgatgcaggtcgcggcggccggtgag
gccgaggcgctgctgatcgatgcggcgctgagcgcgggcggcgccaatccgcgcctgctc
gccgagatcgacaaggcagggccctttggcgcaggcagtcccgagccggttttcgtcttc
ccctcgcatcgcctggtcgaggctgtcgagatcggcagcggcggccatgtccgcatcaag
ctcaagagcggcgacggcgcgaccgtgggcggcatcgccttccgcgtggcgcaggagccg
ctgggacgcgccctgctggcggcgcgtggcgagagcgtccatcttgccgcgacgctgacg
ctgaaccgctggggcggccgtgagagcgccgagctgcgcgtcctcgacatggcgcgcttg
ggctga
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