Bosea sp. 685: RMR04_22645
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Entry
RMR04_22645 CDS
T10282
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bose Bosea sp. 685
Pathway
bose03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bose00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RMR04_22645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bose03019
]
RMR04_22645
Enzymes [BR:
bose01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RMR04_22645
Messenger RNA biogenesis [BR:
bose03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RMR04_22645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NACHT
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
WNJ89193
UniProt:
A0AA96C971
LinkDB
All DBs
Position
complement(4584520..4585977)
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AA seq
485 aa
AA seq
DB search
MTQFTDLGLAEQLLKALASEGYTTPTPIQAQAIPRILEGRDLLGAAQTGTGKTAAFALPL
IHRLLNQPRRMETRSVRALILSPTRELAAQIETSIRAYAQFTTIKSTVVFGGVPVGKQIR
ALGQHVDILVATPGRLLDLVDQRAVSLREIEYLVLDEADQMLDLGFVHALRRIATLIPKK
RQTLLFSATMPKPIREIASAYLTDPVEVSVAPVATTAEKIDQRVIFINPGEKPALLAKTL
SVPEMERAIVFTRTKHGADKVVRQLEISGIKSAAIHGNKSQGQRERALGSFRDGDLRILV
ATDIAARGIDVDGISHVVQFDLPNVAETYVHRIGRTARAGASGVAIAFCTPEERGDLAAI
EKLTRVAITPMGDVPYWDGRTPKKPPQNQGRGGRGQQGGGGRDQGRPQGDRQGRPQPAQA
AKPAGGGQRSDAARHDAPRNDRPQRSEQPAPRKDGGSAKEGLGGVAFLQQRTDQRRTNGA
RRRAN
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgactcaattcaccgacctcggcctggccgagcagcttctcaaggcgctcgcctccgaa
ggttacaccacgcccacgccgatccaggcgcaggcgattccccgcattctcgagggccgc
gaccttctcggcgccgcccagaccggcacaggcaagacggcagccttcgcgctgccgctg
atccaccgcctgctcaaccagccgcgtcgcatggagacgcgctcggtgcgcgcgctgatc
ctgtcgccgacccgtgagctcgcagcccagatcgaaacctcgatccgcgcctatgcccag
ttcaccacgatcaagtcgaccgtcgtcttcggcggcgtgcccgtcggcaagcagatccgc
gcgctcggccagcatgtcgatatcctcgtcgcgacgcccggccgcctgctcgatctcgtc
gatcagcgcgctgtctcgctgcgcgagatcgaatatctcgtcctcgacgaggccgaccag
atgctcgatctcggcttcgtccatgcgctgcgccggatcgccaccctgatccccaagaag
cgccagacgctgctgttctcggcgaccatgcccaagccgatccgcgagatcgcctcggct
tatctgaccgatcccgtcgaggtctcggtcgcgcctgtcgcgaccaccgccgagaagatc
gaccagcgcgtcatcttcatcaaccccggcgagaagccggcgctgctggccaagaccctg
agcgttcccgaaatggagcgcgccatcgtcttcacccgcaccaagcacggcgccgacaag
gtcgtccgccagctcgagatctcgggcatcaaatcggccgcgatccatggcaacaagagc
cagggccagcgcgagcgggcgctcggctccttccgtgacggcgatctgcgcatcctggtc
gccaccgacatcgccgcccgcggcattgacgtcgatggcatcagccatgtcgttcagttc
gacctgcctaacgtcgccgagacctatgtccaccgcatcggccgcaccgcgcgcgccggc
gcgtcgggcgtcgccatcgccttctgcacgcccgaagagcgcggcgatctcgccgcgatc
gagaagctgacccgcgtcgccatcacgccgatgggcgatgtgccgtactgggatggccgc
acgcccaagaagccgccgcagaaccagggccgcggcggacgcggccagcagggcggcggc
ggtcgcgaccagggccggcctcagggtgaccgtcagggccgtccccagcctgcccaggct
gccaagccggccggcggcggtcagcgttcggatgcggcgcgtcatgacgctccccgcaac
gaccgcccgcagcgcagcgaacagcctgcgccgcgaaaagacggtggttccgccaaggaa
gggcttggcggcgtcgcgttcttgcagcaaagaacagatcaacgacgcaccaacggcgcc
cggcggcgcgcgaactga
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