Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_00285
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Entry
GKR98_00285 CDS
T10172
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Pathway
bosg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GKR98_00285 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bosg03021
]
GKR98_00285 (rpoB)
03400 DNA repair and recombination proteins [BR:
bosg03400
]
GKR98_00285 (rpoB)
Enzymes [BR:
bosg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GKR98_00285 (rpoB)
Transcription machinery [BR:
bosg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GKR98_00285 (rpoB)
DNA repair and recombination proteins [BR:
bosg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GKR98_00285 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QMU56775
LinkDB
All DBs
Position
62347..66510
Genome browser
AA seq
1387 aa
AA seq
DB search
MATTYLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLGSGDQPEPMDGEGIMGVFQSV
FPIKDFNETAVLEFVKYELEHPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAC
RIIPYRGSWLDFEFDAKDVVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYDTVNFKLKK
NKGWVTKFFPDRVRGTRPLHDLVDAKSGKVIAEAGKKVTPRAVKKLIDEGKVTDLLVPFD
NIVGRFASRDIINEETGAIYVEAGDELTWELDKAGEVSGGTLKELVDAGVTEIPVLDIDN
ITVGPYMRNTMAVDKNMGRDTALMDIYRVMRPGEPPTVDAASALFDTLFFDGERYDLSAV
GRVKMNMRLALDAEDTVRTLRKDDIVSCIKALVELRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRKVIDTKVTDEVHYMSATEEMRHTVAQANATLDEDGKFINDLVNTRRSG
DYTMSTRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLV
GTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVVRATADLEPGDPGVDIYRLRKFQRSNQ
NTCINQRPLVKVGDTVGKAEVIADGPSTDLGELALGKNVVVAFMPWNGYNYEDSILISER
IVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDETGIVYIGAEVGPAD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELVILERNIYARLSGMLMGKVAVKGPKGVKPKSKIDEEL
LETLSRGQWWQLAIGEEDEAQQIEALNAQYEAQKRALDYRFEDKVEKVRRGDDLPPGVMK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLGDGTPVDFVLNPLGVPSRMN
VGQILETHMGWASRGLGIQIDEALGEYRRSGDMTPVRDAMKIAYGDDVYEEGLKGMKEDQ
LVEAAGNVTRGVPIATPVFDGAKEADVNNALERAGASESGQSDLFDGRTGEQFARKVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAIEDDDD
VSGVAAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacctatcttggccaaaaacgtttacgcaaatattacggcaaaatccgcgaa
gtattggagatgccaaacctgatcgaggttcagaagtcatcttatgacctgttcctgggt
tccggcgatcagcccgagccgatggacggcgaaggcatcatgggtgttttccagtcggta
ttcccgatcaaggatttcaacgagacggctgttctggagttcgtgaaatacgagcttgag
catccgaagtatgatgtcgaggaatgtcagcaacgtgacatgacctatagcgcgcctttg
aaggtgacgctgcggttgatcgtgtttgatgtggacgaagataccggtgcgaaatcggtt
aaagacatcaaagagcaagacgtgttcatgggcgatatgcctttgatgacaccaaacggg
acgttcatcgtgaacggcaccgagcgggttatcgtcagccagatgcatcggtcgcccggt
gtgttctttgaccacgacaagggcaagacccatgccagcggcaaattgctgtttgcatgc
cggatcattccttatcgcgggtcctggttggatttcgaattcgacgcgaaagacgtcgtt
tttgcccgtatcgaccgtcgccggaaattgcctgtaacgacgctgttgtatgcgcttggt
ctggatcaagaagcgatcatggatgcgtattacgacaccgttaacttcaagcttaagaag
aacaagggctgggtcaccaagttcttccctgatcgcgtgcgcggaacccgtccgttgcat
gatctggtggatgcgaagtctggcaaggtgattgctgaggccggtaagaaagtgacgcca
cgcgcggtcaagaagctgatcgacgaaggcaaggtcactgatctgttggtaccgttcgac
aatattgtcggtcggtttgcgtcacgtgacatcatcaacgaagaaaccggtgcgatttac
gtcgaagccggggacgagttgacatgggaactggacaaggccggtgaagtctctggcggc
acgctgaaagaacttgtggatgccggtgttaccgaaatccctgttctggacatcgataac
atcactgttgggccttacatgcgcaacacgatggcggttgataagaacatgggtcgcgac
acggcactgatggacatctaccgcgtgatgcgtccgggcgagccgcccaccgttgatgcg
gcgtctgccctgttcgacacattgttctttgatggcgagcgttatgacctttcggctgtt
ggccgcgtgaagatgaacatgcgtctggcgctggatgccgaagatacagtgcgcactttg
cgcaaggacgacattgtgtcctgtatcaaggcgctggttgaactgcgcgacgggcgcggc
gacatcgacgatattgaccaccttgggaaccgccgggtgcgctcggtcggggaactgatg
gagaaccagtatcgcgttggtcttctgcgcatggaacgcgcgatcaaagagcgtatgtct
tcggtcgagatcgacacggtcatgccgcaggatctgatcaatgccaagcctgctgcggcg
gctgtgcgcgagttttttggctcgtcccagctttcgcagtttatggaccaaaccaaccca
ttgtcggaagtcacgcataagcgtcgtctttctgcgcttgggcccggtggtctgacccgc
gaacgtgcaggctttgaggtgcgcgacgtgcacccgacccactatggtcggatgtgcccg
attgagacaccggaagggccgaacattggtctgattaactcgctggctacgtttgcccgc
gtcaacaagtatggctttatcgaaacaccgtatcgcaaagtgatcgacacgaaagtgacc
gacgaggttcactatatgtcggccaccgaagaaatgcggcacacggtggcacaggccaac
gcgacgctggatgaggacggcaagttcatcaatgatctggtgaacacacgtcgttcgggt
gactatacaatgtcgacccgtgaaagtgttgatttgattgacgtttctccaaaacagctg
gtgtcggttgcggcttcgcttattccgttccttgaaaatgacgatgcgaaccgggccctg
atgggttcgaacatgcaacgtcaggcggttcctttgttgcaggcggaagctccgcttgtc
ggcaccgggatcgaagaagttgtggcacgggattccggcgcggccatcatggccaaacgc
gctggtatcatcgaccaggtggatgcgcagcgtatcgttgtgcgcgcgacggctgatctt
gagccgggcgaccctggtgtggacatctatcgtctgcgcaagttccagcggtcgaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtgggtgacacggttggcaaagccgaa
gtgatcgcagatggtccatcgaccgatctgggtgaactggcgctgggcaagaacgtggtt
gtcgcgttcatgccgtggaatggttacaactacgaggactcgatcctgatttccgagcgt
atcgtgcgcgacgacgtcttcacctcgatccatattgaggaattcgaagtcgcggcccgt
gataccaagcttgggccggaagagattacccgtgatatcccgaacgtcggcgaggaagcc
ctgcgcaacctcgacgaaacaggcatcgtttacatcggtgccgaggttgggcctgcggat
attctggttggcaagatcacaccgaagggcgaaagcccgatgacgccggaagaaaagctt
ctgcgcgccatctttggtgagaaagcatctgacgtgcgtgacacgtcgctgcgtctgccg
ccgggtgactatggaacggtcgtggaagtgcgcgtctttaaccgccacggtgtggaaaaa
gacgaacgtgcgcttcagatcgagcgtgaagaagtcgaacgtctggcacgtgaccgggac
gacgaattggtcatccttgagcgcaacatctatgcgcgtctgtcgggtatgttgatgggc
aaagttgccgtcaaaggaccgaagggcgtcaagccaaagtcaaagattgacgaggaactg
ctggaaacgctgagccgtggccagtggtggcagcttgccatcggcgaagaagacgaagcc
cagcagatcgaagcgctgaacgcccagtatgaggcgcagaagcgtgcgttggattaccgt
ttcgaagacaaagtcgagaaggtgcgccggggcgatgatctgccaccgggtgtgatgaag
atggtcaaagtcttcgttgcggtgaagcgcaagctgcagccgggcgacaagatggccgga
cgtcacggcaacaaaggtgtgatttcgaaggtggttccaatggaggacatgccgttcctt
ggggatggcacaccggttgatttcgttctgaacccgctgggtgttccatcgcgtatgaac
gtcgggcaaatccttgaaacccacatgggttgggcatcgcgcggtctgggtatccagatt
gacgaagctttgggtgagtatcgccgttccggtgacatgaccccggtgcgggacgcgatg
aagatcgcctacggtgacgatgtttacgaagaaggcctgaagggcatgaaagaggaccag
ctggtcgaagctgcgggcaatgtgacccgtggtgttccgatcgcaacgccggtcttcgat
ggtgccaaagaagctgacgttaataatgcgttggagcgtgccggggccagcgaaagcgga
caatctgatctgtttgatggccgcacgggcgagcaattcgcgcgtaaagtcaccgttggg
atcaagtatctgctgaaactacaccaccttgtggacgacaaaatccacgcgcggtctacc
gggccttacagccttgtcacgcagcagcctctgggtggtaaagcccagttcggcggtcag
cgtttcggggaaatggaagtctgggcgctggaagcttatggcgcggcgtatacgctgcag
gagatgctcaccgtcaagtcggacgacgttgcaggccgcaccaaggtctatgagtcgatc
gtcaagggcgaggacaacttcgaagcgggcgtgcctgaaagcttcaatgtgcttgtgaaa
gaagtccggggcctcggcctcaatatggaacttctggatgcgattgaggacgatgatgat
gtgtccggggtggcagcggaatga
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integrated database retrieval system
