Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_00295
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Entry
GKR98_00295 CDS
T10172
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Pathway
bosg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GKR98_00295 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bosg03021
]
GKR98_00295 (rpoC)
03400 DNA repair and recombination proteins [BR:
bosg03400
]
GKR98_00295 (rpoC)
Enzymes [BR:
bosg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GKR98_00295 (rpoC)
Transcription machinery [BR:
bosg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GKR98_00295 (rpoC)
DNA repair and recombination proteins [BR:
bosg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GKR98_00295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QMU56777
LinkDB
All DBs
Position
66797..71038
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQELTTNPFNPLAPVKTFDEIKISLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLQYGQLMSEEEYMDAQDAYGMDAFT
ANIGAEAIREMLQNIDLEAEAEQLRVDLSEATGELKPKKIIKRLKIVENFIESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYISMEREGMKGEGMIFSDPDEVQHAL
DAGEVQLHAKIQARIQQVDDEGNVVWQRFETTPGRVKLGALLPLNAKAPFELVNRLLRKK
EVQQVIDNVYRYCGQKESVIFCDHIMTMGFREAFKAGISFGKDDMVIPDAKWKIVDTVRS
QVKEFEQQYMDGLITQGEKYNKVVDAWSKCSDDVAGAMMDDISSMKKDDAGAEMEPNSVY
MMSHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRMHDCGTENAITAEPAVNDGEIVASLGERLLGRV
AAEDVIKPGTDEVIVTKGELIDERKADAIEQADLPTVRMRSPLTCEAEEGVCAMCYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFLEASQDGRIEFRNAN
LLKNEAKDMIVMGRNMQLVIIDENDIERASHKLTYGTKVFPKEGDKVVRGDKLFEWDPYT
LPIIADKAGTVRFVDLVSGISVRDETDDATGMSQKIVTDWRSAPKGSDLKPELILVGSDG
EPVRNDQGNPITYPMSVDAILSIEEGEDVKAGDVIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVKFGRDYKNKRRIAIEPADEAQEQVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGETTLLKGEHVDKAEFDAANEKAANEGRRLAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDTLVGLKENVIVGRLIPAGTGGATQTVRLEAGRRDQKVIDEARA
EAEAAAALAAPMDDFADATEIDADLVETPESRD
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaacaaacccgtttaacccgcttgctccggttaagacgttcgac
gagatcaagatctcgctggcgtcgcctgagcggatcctgtcgtggtcgtatggcgagatt
aaaaagccggaaaccatcaactatcggacgttcaagcccgagcgtgatggtctgttctgt
gctcgtatctttggcccgatcaaagattacgaatgtctgtgcggtaaatataagcgcatg
aagtatcgcggcgttgtctgcgagaaatgcggtgtggaagtgacgcttcagaaggtgcgt
cgcgagcggatgggccatattgaactggccgctccggttgcgcacatctggttcctgaaa
tcgctgccatcccgtatcggcctgatgctggacatgacgctgcgcgatctggaacgcatt
ctttacttcgagaactatgtggtgatcgaacccggcctgactgacctgcaatacggtcag
ttgatgtcggaagaagaatacatggatgcgcaggacgcttatggcatggacgccttcacg
gcgaacatcggtgccgaagcgatccgtgagatgttgcagaacatcgaccttgaagccgag
gccgagcagctgcgcgttgatctttccgaagcgacaggtgagctgaagccaaagaagatc
atcaagcgtctgaagatcgtcgagaacttcatcgagtccggcaaccgcccggagtggatg
gttctgaccgtgatccctgtgatcccacccgagttgcgcccactggtgccgctggatggt
ggtcgctttgcgacctcggatctgaacgacctttatcgccgcgtgatcaaccggaacaac
cgcctgaagcgcctgatcgagcttcgtgcgccggatatcattgtgcggaacgaaaagcgg
atgctgcaggaatctgtggatgcgctgtttgacaacggccgtcgcggtcgcgtcatcacg
ggtgccaacaagcgcccgctgaagtcgctgtcggacatgctgaaaggtaagcagggtcgt
ttccgtcagaaccttttgggtaagcgcgtcgacttctcgggtcgttcggtcattgtgacc
ggcccggaattgaagctgcaccagtgtggtttgcccaagaagatggcgttggagctgttc
aagccgttcatctattcgcgtcttgaagccaaaggtctgtcttcgaccgtgaagcaggcg
aaaaagctggtcgagaaagagcgtcccgaagtttgggatattctggacgaggttattcgc
gagcatccggttctgttgaaccgtgcgccgacgctgcaccgtcttggtatccaggcattt
gagccggttctgatcgaaggtaaagccattcagcttcacccgctggtttgttcggccttt
aacgccgactttgacggcgaccagatggctgttcacgtacccctttcgctggaagcccag
ttggaagcccgcgtgttgatgatgtcgacgaacaacgttctgtcgcctgccaacggtgcg
ccgatcattgttccttcgcaggatatgatccttggtctctattacatctcgatggagcgc
gaaggcatgaagggcgaggggatgatcttctcggacccggacgaagttcagcacgcgctg
gatgccggtgaagttcaactgcacgccaaaattcaggcgcgtattcaacaggttgacgac
gaaggcaatgttgtctggcagcggtttgaaaccacgccgggccgcgtaaagctgggcgca
ttgttgccgctgaatgcaaaggctccgtttgagctggtgaaccgtcttcttcgcaagaag
gaagtgcagcaggtcatcgataacgtctatcgttactgtggtcagaaagagagtgtgatc
ttctgtgaccacatcatgacgatgggtttccgcgaagcgttcaaggcaggcatttcgttc
ggtaaggacgacatggtgatccctgatgccaagtggaaaatcgttgatacggtgcgcagt
caggtcaaagaattcgaacagcagtatatggacggcctgatcactcagggcgagaaatat
aacaaagttgtcgacgcctggtcgaagtgttcggatgacgttgctggtgcgatgatggac
gatatttcgtccatgaagaaggacgatgccggtgccgaaatggaaccgaacagcgtctat
atgatgtcgcactctggtgcgcgtggttcgcctgcgcagatgaagcagttgggcgggatg
cgcggtctgatggccaagccttcgggcgagatcatcgaaacgccgatcatctcgaacttt
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggggcccgaaaaggtctt
gcggatacggcgttgaagactgcgaactcgggctatctgacccgtcgtctggtggacgtg
gcgcaggattgcatcgttcgtatgcatgattgtggcactgaaaacgccattacggcggaa
cctgcggtgaacgacggtgaaatcgttgcttcgcttggtgaacgcctgcttggccgcgtt
gcggccgaagacgtgatcaagccgggcaccgacgaagtgatcgtcaccaagggtgagttg
atcgacgagcggaaagcagacgcaatcgaacaggccgatctgccaacggttcgtatgcgt
tcacctctgacctgtgaggccgaggaaggcgtttgcgccatgtgttatggtcgtgacctt
gcacgcggcacgttggtcaaccagggcgaggctgtcggtatcatcgcggcccagtccatt
ggtgaacccggcacacagctgacgatgcggacgttccacatcggcggtattgcccagggt
ggtcagcagtcgttcctggaagcgtctcaggatggccggatcgagttccgcaacgccaat
ttgttgaagaacgaagccaaagatatgatcgtgatgggtcgcaacatgcagcttgtcatc
atcgacgagaacgatatcgaacgggccagccacaagctgacctacggcaccaaagtcttc
ccgaaagagggcgacaaagttgtccgtggcgacaagttgttcgaatgggatccgtatacg
ttgccgatcatcgccgacaaggcggggacggtgcggtttgtcgaccttgtttcgggcatt
tcggtgcgcgacgagaccgacgatgcgacaggtatgagccagaagatcgtgaccgactgg
cgttccgcgccaaaaggcagcgatctgaagcccgagctgatccttgtgggcagcgacggc
gagccggttcgtaacgatcagggcaacccgatcacctatccgatgtcggtggacgcaatt
ttgtcgatcgaagaaggcgaggacgtcaaagcgggtgacgtgattgcgcgtattccgcgg
gaaggtgcgaagacgaaggacatcaccggtggtctgccacgtgttgccgaactgttcgaa
gcgcgccgtcctaaagaccacgcgatcattgctgaaattgatggctatgtgaaattcgga
cgcgactataagaacaagcgccggattgcgattgaacctgcggatgaagcgcaggagcag
gtcgaatacatggtgccgaaaggcaagcacatccctgtggccgaaggcgacttcgttcag
aagggtgactacatcatggacggtaacccggcgccgcatgacatcctgtcgattatgggt
gtcgaagcgctggcggactatatgatcgacgaagtgcaggacgtttatcgccttcagggt
gtgaagattaacgacaagcacatcgaagtcatcgtccggcaaatgctgcagaagtgggaa
atccaggattctggtgaaaccacacttctgaagggcgaacatgtcgacaaggccgagttt
gatgccgccaacgaaaaggcagcaaacgaaggccgtcgtctggcacagggcgagccgatc
cttctggggatcaccaaggcgtccttgcagacacgttcgttcatctcggcagcatcgttc
caggaaacgacgcgggttctgaccgaagcttcggttcagggcaagcgcgacacgctggtc
ggtctgaaagagaacgtcatcgtcggccggttgatcccggcaggcaccggcggcgcgacc
cagactgtgcgtctggaagccggtcgtcgcgaccagaaggtcatcgacgaagcccgcgcc
gaggcagaagccgccgctgcgctggccgcgccgatggacgacttcgccgatgcgaccgag
atcgacgccgatctggtggaaacaccggaaagccgcgactga
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