Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_06045
Help
Entry
GKR98_06045 CDS
T10172
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Pathway
bosg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKR98_06045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bosg03019
]
GKR98_06045
Messenger RNA biogenesis [BR:
bosg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GKR98_06045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
GP57
Motif
Other DBs
NCBI-ProteinID:
QMU57793
LinkDB
All DBs
Position
complement(1202651..1204318)
Genome browser
AA seq
555 aa
AA seq
DB search
MSKERLIYLPLGGAGEIGMNAYVYGWGKPDEERLIVVDLGVTFPDMEGSPGVDLIFADAE
WLEARADRIEGIFITHAHEDHVGAVGHLWPRLRAPIYARKFTAHHAVRKLNDQGQDDNAV
NVVNAWPEQVTVGPFKVGLAPISHSIPESSAMVIDTPAGRIVHTGDFKLDETPLVGEAWD
PELWDSIAAEGVKVLVCDSTNVFSPLPGRSEASVGPEIVKLVSSAKGMVVATTFAPNVAR
VKTLAEAGAAAGRSICLLGRAMRRMVEASITTGVLTEFPTVVSPEEAQDIPRENLMLLVT
GSQGERRAASAGLSRGKYLGLQVAEGDLFLFSSKTIPGNEKGVNRIINAYSEKGVDIVDD
SSGHYHVSGHANRPDLDTVHELIKPKMVIPMHGEHRHLREHTKLAAENGLASILATNGTM
VDITGDTPKVAEYVEAGRTYLDGNVQIGAMDGVVRDRIRMAINGHVLVTLIMEDHDALGD
PWVELSGLPETGNSKAPLVDVLEEDLSQFIGRAKRKTLADDGALEKELRQIVRKSSQDEI
GKKPEVTVVVSRLSD
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagaacgcctgatttatctgccgctgggcggcgccggcgaaattggaatgaac
gcctatgtttatggctggggcaaaccggatgaggaacgtctgatcgtggttgatctcggc
gtgaccttcccggacatggaaggctcgcccggggttgatctgatctttgcggatgccgaa
tggctggaagcccgtgcagaccggatcgaaggcatcttcatcacccatgcgcatgaagat
cacgttggcgcggttggccacctttggccccgtttgcgcgcgccgatctatgcgcgcaaa
tttacggcgcatcatgcagttcgcaaactgaatgatcaggggcaggacgacaatgcggtc
aacgttgtgaacgcttggcccgagcaagtgaccgtggggccgttcaaagttgggctggcc
cccatcagccactcgatccccgaaagctcggccatggtcatcgacacgccagcgggtcgg
atcgtgcacaccggcgatttcaagctggatgaaacacccctggtgggcgaggcatgggat
cccgaattgtgggacagtatcgcggccgagggtgtgaaggtgctggtctgcgattcaacg
aacgtattctcgccactgccgggccgatccgaagccagcgttggccctgaaatcgtcaaa
ttagtcagcagtgccaaagggatggtcgttgcgaccacctttgcgccaaacgtcgcccgt
gtaaaaacactggccgaggccggggctgccgcagggcggtcaatctgccttttgggccgc
gcaatgcggcgtatggtcgaagcctcgatcacgaccggcgtgctgaccgagttcccgaca
gttgtgtccccggaagaggcgcaggatatcccgcgtgaaaacctgatgttgctggtcact
ggcagtcagggcgaacgccgcgcagcatcggccgggctgagccgtggcaagtatctgggg
ctgcaagtggccgagggcgatctgtttctgttctcatccaagaccattcctggcaatgaa
aagggcgtgaaccggatcatcaatgcctacagcgaaaagggcgtcgatattgtcgacgac
agctccggccattatcacgtttccggtcatgccaaccggcccgatctggacacggtgcat
gagcttatcaagccgaagatggtcataccgatgcacggggaacatcgccacttgcgcgaa
cacacaaagctggcagcggaaaacggattggccagcattctggcgacgaacggcaccatg
gtggatataaccggggatacgccaaaagtggccgaatacgtcgaagccggacgcacctat
ctggacggcaacgtgcagatcggcgcgatggatggcgttgtgcgcgaccgcatccgtatg
gcgatcaacggccatgttttggtgacgctgattatggaagaccacgacgccctgggcgac
ccctgggtcgaactttcggggctgccggaaactggtaattcgaaggcgccgttggtggat
gttctggaagaagacctgagccagtttattggtcgtgccaagcgcaaaacgcttgccgac
gacggggctttagagaaagaactgcgccagatcgtgcgtaaatcctcgcaggatgagata
ggtaaaaaaccagaagtcaccgttgtcgttagccgcttaagtgattga
DBGET
integrated database retrieval system
