Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_06390
Help
Entry
GKR98_06390 CDS
T10172
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bosg03032
]
GKR98_06390 (topA)
03400 DNA repair and recombination proteins [BR:
bosg03400
]
GKR98_06390 (topA)
Enzymes [BR:
bosg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GKR98_06390 (topA)
DNA replication proteins [BR:
bosg03032
]
Prokaryotic type
DNA Topoisomerases
GKR98_06390 (topA)
DNA repair and recombination proteins [BR:
bosg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GKR98_06390 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QMU57858
UniProt:
A0A7D7ZLA1
LinkDB
All DBs
Position
1262154..1264697
Genome browser
AA seq
847 aa
AA seq
DB search
MSVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDTENEFSMKWEVASDSKK
HIKAIADALKDDGELILATDPDREGEAISWHLEEALRNRKAIKKDTPVSRVVFNAITKSA
VTEAMQNPRQVDQDLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVE
REMEIEVFNAREYWTVKAILETPRGQAFEARLTVLGGSKLDKFDIPNDTAAELAVKAIES
RDLLVKSVEAKPATRNPSPPFMTSTLQQEASRKFGFGARQTMQVAQRLYEAGHITYMRTD
GIDMAPEAVMAARDAIKDRYGAEYVPDSPRMYKNKAKNAQEAHECIRPTEMTADAEKLKL
ADPDQRKLYELVWKRTLASQMAAARMERTTVDIASGDGQVELRATGQVVLFDGFIRVYEE
GRDDQVVDDDDKRLPQIMQGEATKKNSISPEQHFTQPPPRYTEATLVKRMEELGIGRPST
YASIVTTIQDRGYVRKEKNRLFPEDKGRLVIAFLENYFRRYVGYDFTAKLEDELDDITAG
EREWQDVLARFWRDFKAAIEETSELRITEVLEKINEVLEPHLFPPTEDGGDPRLCPNCGA
GRLSMRTARSGGAFIGCSNYPECRYTRAFGPPGTEAESAIPPEGKNLGQDEGDNIWVHKG
RFGPYVQRGEVTEENKKPPRQSIPKDWPPEDVELQQALKLLSLPRKIGPHPDDGVPIWAN
IGRYGPYLKYAESTSDRGGVNANLEGIEEVWTVGMNRAVELIAAKVASRGGRGAAAKPLR
ELGDHPDSGGLVAIMDGKYGPYVKWEKVNATLPKETDPEAVTMEMAVELITAKAGTKKKG
GRRKKAS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcgtcgtggttgaatcccctgctaaagccaagacaataaacaagtatctcggt
tccgattacacagttcttgccagctacggacacgtccgtgaccttcccccgaaggatgga
tcggtcgataccgagaacgagttttcgatgaaatgggaggttgccagcgattcgaaaaag
cacatcaaggccatcgccgatgccctgaaagacgatggtgagctgatactcgccaccgac
cccgaccgagaaggcgaggcgatcagctggcatctggaagaggcgcttcgtaaccgcaaa
gcgatcaagaaagacaccccagtcagccgggttgttttcaacgcaatcacaaaatccgcc
gtcaccgaagcgatgcaaaacccacgccaggttgatcaggatctggtcgaggcttatctg
gcccgccgcgcgttggattaccttgtcggcttcaacctgtcccccgttctgtggcgcaag
ctgccgggcgcgaaatcggctggtcgcgtccagtcggtttgtctgcgcctgatcgtcgaa
cgcgagatggagatcgaggtcttcaacgcacgcgaatactggactgtgaaagccatcctc
gagacaccacgcggccaagcgttcgaagcgcgcctgacagtcttgggcggctcgaagctg
gataagttcgacatcccgaacgacacagctgccgaactggccgttaaggcaatcgaaagc
cgcgatctgctagtcaaatccgtcgaagccaaaccggccacgcgaaatccgtcgccgccg
ttcatgacttcgacgctgcaacaggaagccagccgcaagtttggtttcggtgcgcggcag
acaatgcaagtggctcagcggctctatgaagccgggcacattacatacatgcggaccgac
ggcatcgacatggcgcccgaagctgtgatggccgcgcgcgatgcgatcaaagaccgttac
ggcgcggaatatgtcccggacagcccgcggatgtataagaacaaggcaaagaacgcgcag
gaagcgcacgaatgtatccgcccaaccgaaatgacggcggatgctgaaaagctgaagctg
gccgacccggatcagcggaagctctatgagctggtctggaaacgcacattggccagccag
atggccgccgcccggatggagcgtacaacggtcgacatcgccagcggcgatgggcaggtt
gaactgcgcgcaaccggtcaggtcgttctttttgatggcttcattcgcgtttacgaagaa
ggccgcgacgatcaggttgttgatgacgacgacaagcgcctgcctcagatcatgcaaggc
gaagcgacgaaaaagaactcgatctcgcccgaacaacatttcacccagccaccgccgcgt
tataccgaggccacgctggtcaaacgcatggaagaacttgggattggccgcccttcgaca
tacgcgtcgattgtaacgaccattcaggatcgcggctacgtccgcaaagaaaagaaccgc
ctgttccccgaagacaaaggccgcttggtcattgcgttccttgagaattacttccgccgc
tatgtggggtatgattttaccgccaagttggaagacgagctggacgacatcacggcaggc
gaacgcgaatggcaggatgttttggcgcgtttctggcgagacttcaaagccgcgattgaa
gaaacatccgagcttcgtatcaccgaagttcttgaaaaaattaacgaagttctggagccc
cacctattcccgcccaccgaagatggcggcgatccgcgtctctgcccgaactgtggcgct
ggccgcctgtcgatgcgcacggcacgctctggtggcgccttcattggctgctcaaactac
cccgaatgccgctacacccgcgctttcggtcctccgggcaccgaagcagaaagcgccatt
cctcccgagggcaagaacctcggccaggacgaaggcgataacatctgggtgcacaagggc
cgcttcggtccttatgtgcagcgcggcgaagtgaccgaagagaacaagaaacccccgcgt
cagtccattccgaaggattggccgccagaagacgtcgaattgcaacaggcgcttaagctc
ttgtccctgccccgcaaaatcggcccgcaccccgacgatggcgtgccgatctgggccaat
atcggccgctatggcccctatctgaagtatgctgaaagcacatcggatcgaggcggcgta
aacgccaacctggaaggcatcgaggaagtctggaccgttggcatgaaccgcgcggtcgag
ctgatcgccgcaaaagtcgcatcacgcggcgggcgcggtgctgcagccaaacccctgcgc
gaattgggggatcatcccgacagtggtggtcttgtcgccatcatggacggcaaatacggg
ccttatgtgaaatgggaaaaagtcaacgcgacgttgcccaaggaaacagaccccgaagcc
gtaaccatggaaatggcggttgagttgatcacagcgaaggctggaaccaagaaaaaaggc
gggcggcgcaagaaagcgagctga
DBGET
integrated database retrieval system
