Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_07445
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Entry
GKR98_07445 CDS
T10172
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bosg03019
]
GKR98_07445 (hrpB)
Enzymes [BR:
bosg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GKR98_07445 (hrpB)
Messenger RNA biogenesis [BR:
bosg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GKR98_07445 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
HA2_N
AAA_19
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QMU58043
UniProt:
A0A7D7VFI2
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All DBs
Position
1474122..1476596
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AA seq
824 aa
AA seq
DB search
MARASFPVQRSIFIEYPDGLGYIKRVTFNPPIDAALPDLVTALSSEGRGVLQAPPGAGKT
TCVPLAMLEAGLTDMRIVMLEPRRLAARAAATRMAEMIGEKVGGKVGYRIRGDAKVSRET
RIEVVTEGILTRMIQSDPSLDGIGAVIFDEFHERSLNADLGLALALEVREALRPDLILLA
MSATLDAAPVARLMGDAPLITSAGTSFDVETHWLDRPIPRDVWFDVAMADQVVRAANETE
GSILAFLPGEGEIRRVMQRLTDRLPDIAVLPLYGALPFPQQQKAIRPGTGRRIILATAIA
ETSLTIPDITVVVDGGRARRARFDPGSGMSRLVTERVTCTEADQRRGRAGRVSAGVCFRM
WTKGEDGALAAFPPAEIEAADLAGLALELAEWGTTDLPFLTPPPEGALAEAQDLLTALGA
FENGAITSHGKKLASMPLHPRLAHMLETAGKSSALLAALLADRDPLRGGGAYLGKRLAAL
KSSRREGQLDRIRAEAKRLEKRAPPAKIIDPGEQAALAYPDRIGLRRPGDDPRWLLSGGK
GAKMSNEDDLAGARLLVVTDTDGHAREATIRTALPVNEAALRDVFRDQILTKESVEWSRR
EGRLIARTEERLGAIALSSKAWKDAPDDQIAQGMLTGIRQLGLFPAAAANRFRARVALVR
AAGHDLPAMDDATLLEGLEDWLLPHLTKVRSAADWKSFDILPALRARLTWEQTQTLDRET
PPNWVTPLGRKIPIDYEGEDPAIALRLQEMFGTTRHPNVAGRALRVTLLSPAGRPVQTTM
DIPGFWATSYADVRKDMRGRYPKHPWPEDPTEAQATLRAKPRKP
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtgcgtctttccctgtccagaggtcgattttcatcgaatatcccgacgggctt
ggatacatcaaaagggtgactttcaatccacccatagacgccgccttgccggatttagtg
accgcgctgtcgtcggaaggccgcggggttttgcaggcaccacccggggcgggcaagaca
acctgtgtgccattggcaatgcttgaggccggattgaccgacatgcgcattgttatgctg
gaaccccgacgccttgctgcgcgagccgctgcaacgcgcatggccgagatgattggtgaa
aaggttggcggtaaagtgggataccgcattcgcggagacgcaaaagtttcacgtgagacc
cggatcgaagtggtgacagaaggcattctgacccggatgattcagtcggacccaagtctg
gacggcatcggcgcagttatctttgacgaattccacgaacgatccctgaacgctgattta
ggattggcgctggcgctggaagtgcgcgaagccttacgccccgatctgatacttctggcg
atgtcagcgacattagacgccgcccccgttgcgcgcctgatgggggatgcaccgctgatc
acctcggcgggcaccagctttgacgtggaaacccactggcttgaccgcccgatcccgcgc
gatgtctggttcgacgttgccatggccgatcaggttgtgcgggctgccaatgaaacagaa
ggcagcattctggcgttcttacccggcgaaggcgagatacggcgcgtcatgcagcgcctg
accgaccggctgcctgatatcgccgttctgccgctctatggcgcactgccatttccacaa
cagcaaaaggcgatacgccccggcacagggcgtcggatcatcctggcaaccgcgattgcc
gaaacctcgctgaccattcccgacattacggttgtggtcgacggcgggcgcgcgcgacgg
gcgcgatttgatccaggctcgggcatgtcgcggctggtgaccgaacgcgtgacctgcacc
gaagctgaccaaagacgcggccgcgctggtcgggtttcggctggggtatgttttcgcatg
tggacgaaaggcgaggacggcgcgttggcggcgtttccgccggcggagattgaagccgcc
gatcttgcagggctggcgctggaactggccgagtggggaacaactgatttgcccttcctg
acgccgccgcccgagggcgctttggccgaggcgcaggacctgctgacggccctgggagcg
tttgaaaacggcgcaattacgagccacggcaaaaaactggcttctatgccgctgcaccca
agactggcgcatatgcttgaaactgcggggaaatcttccgcgctattggctgcgcttctg
gcggatcgcgatcccttgcgggggggtggtgcctatcttggcaagcggctggcagctttg
aaaagtagccgccgcgaaggccagctggaccgcattcgggccgaggccaagcggttggaa
aaacgcgcgccgcctgcgaaaattatcgaccccggcgaacaagctgcattggcatacccc
gaccgcatcggcctgcgccgtcccggagatgatcccaggtggctattgtcggggggcaag
ggcgcaaaaatgtcgaatgaggatgatctagcaggcgcgcgtctgctggtggtcaccgac
acggacggtcatgcgcgcgaggcgacaatacgcaccgctttgcctgtcaacgaggcggct
ttgcgcgatgtgtttagggatcaaatcctgaccaaggaatcagtcgaatggtcccgacgc
gagggacgcttgattgcccgcaccgaggaacggcttggcgccatcgccctgtcgtccaaa
gcctggaaagacgcgccagatgatcagatcgcccaaggcatgctgaccggtattcgccaa
cttggcctgttccctgcggcggcggccaaccgttttcgcgcccgcgtggcgcttgtccgg
gcggcgggtcatgatctgccagcgatggacgacgcaacactcctggaaggcctcgaagac
tggcttctgccgcatctgaccaaagtacgcagcgctgccgactggaaatcattcgatatc
ctgcccgccctgcgcgcccgcctgacctgggaacagacccaaacgctggatcgcgaaacc
ccacccaactgggtcactccactgggccgcaagatccccatcgattatgaaggcgaagac
cccgcgatcgcgcttcgcctgcaagagatgttcggaacaacccgccacccaaacgttgcg
ggtcgcgcgttacgcgtgacgctcctgtctcccgccggacggccagtgcagaccacaatg
gatatccccggcttttgggccacatcttatgcagatgttcgaaaagacatgcggggacgt
tacccgaaacacccgtggcccgaagacccgaccgaggctcaggcaacattacgcgccaaa
cccagaaaaccctga
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