Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_11860
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Entry
GKR98_11860 CDS
T10172
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Pathway
bosg03030
DNA replication
bosg03430
Mismatch repair
bosg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GKR98_11860 (dnaE)
03430 Mismatch repair
GKR98_11860 (dnaE)
03440 Homologous recombination
GKR98_11860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bosg03032
]
GKR98_11860 (dnaE)
03400 DNA repair and recombination proteins [BR:
bosg03400
]
GKR98_11860 (dnaE)
Enzymes [BR:
bosg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GKR98_11860 (dnaE)
DNA replication proteins [BR:
bosg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GKR98_11860 (dnaE)
DNA repair and recombination proteins [BR:
bosg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GKR98_11860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
Lyx_isomer
Motif
Other DBs
NCBI-ProteinID:
QMU58827
LinkDB
All DBs
Position
2360334..2363807
Genome browser
AA seq
1157 aa
AA seq
DB search
MNNDPRFIHLRVHTEYSLLEGAVRLKKLPAICQKMEMPAVAVTDTNNMFAALEFSVSALD
AGVQPIVGCQVDLAYEVAGPGEKAVPPAPLVLLAQNRSGYEGLMRLNSALYMREADWPHV
TMEELAANSEGIICLTGGPDGPIGRTLRAGHDGKAKLLISRLAEIFENRLYVELQRHPTE
NGESPEAERLSEAPQVAMAYELDLPLVATNDVYFPKTEMYEAHDALICIAEGAYVDQQAP
RRRLTPQHYFKTPAEMATLFADLPEALENTVEIARRCAFGAERHDPILPKFADDEIEELR
RQSKLGLDERLAAIEPAAPREEYDKRLEFELGIIEGMGFSGYFLIVADFIKWAKTNDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QEKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKLIPVEGVKPVSIEKALA
DEPRLREEAKAEEVVERLLNYGQQVEGLLRNASTHAAGVVIGDRSLDKLVPLYRDPRSDM
AATQFNMKWVEQAGLVKFDFLGLKTLTVIQNALDLLAERDVEIDIGAIPLDDEKTYELYA
KARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMENIPQYCDVKNGRAERER
LHPTIDHILDETQGIIVYQEQVMQIAQEMAGYSLGGADLLRRAMGKKIQEAMDAERPKFL
EGAAKNDVDKKKALEVWNLLDKFANYGFNKSHAAAYAVVSYQTGWLKANYPVEFMAGVMN
CDLHLTDKLATYAAEVRLPEERGGLGLEIVPPCVNRSSARFSVIDGKLVYALGALKNVGV
EAMRLIVEAREDKPFVNVFDIARRCDLKRIGKRPLEMLARAGAFDQLDPNRRRMFQSLDA
LAAYSAAIHEQRESAQVSLFGEAGDDLPEPRLSPVDDWMPNERLAEEQIAIGFYLSGHPL
DDYANALKKKNCLTLAELQTKAEAEGGAVARVGVIVSALQERKSGRGTRFFRMNISDPTG
QVSGMALFPDDFDTVRNVFDQTTQVVMTLEARFNEGQFDPIARGVTPIDGVVGTVAAGLN
VMIDTDEAVPLIQSVLHRFRDDGSVKTKGEICITALDILLGDTPQDVPVPIGDNWPVSPK
IKGALKSLPGVVLVEDT
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgacccccgattcattcacctgcgcgtccacaccgagtattcgcttttggaa
ggcgctgtgcgtctgaaaaaattgcccgcgatttgtcagaagatggaaatgccggcagtt
gcggtgaccgataccaacaacatgttcgccgctttggagttttcggtgtctgcgttagat
gccggcgtgcagcccattgtcggctgccaggttgacctggcttatgaagttgctggaccc
ggcgagaaagcagtgccacctgcgccgttggtgttgctggcgcagaatcgttccggctat
gaggggctgatgcgattgaattcggcgctatatatgcgcgaggcggattggccgcatgtg
accatggaagagttggccgcgaattccgaggggattatctgtttaacgggcgggccggac
gggccgattgggcggacattacgtgccgggcatgacggcaaagccaaattattgatttcg
cgattggcggagatcttcgagaaccggctgtatgtcgagctgcaacgccacccgaccgaa
aacggtgaatcgcctgaggctgagcggttgagcgaagcaccgcaagtcgcaatggcttat
gagcttgatctgccgctagtcgcgaccaacgatgtctatttcccgaaaaccgaaatgtat
gaagcccatgacgcgttaatctgcatcgcggaaggggcatatgtcgatcaacaggcgccc
cggcggcggctgacgcctcagcactatttcaagacacccgccgagatggcaacgcttttt
gcggatttgcccgaggcgttggaaaacacggttgagatcgcaaggcgatgcgcatttggg
gccgaaaggcacgacccgattttgccgaagtttgccgatgatgagatcgaagaattgcgg
cgccaatccaagttgggtctggacgaacgcttggcagcgattgaaccggcagcaccgcgc
gaggaatacgacaaacgactggagttcgagctggggattatcgaggggatggggttttcc
ggatacttcctgatcgttgcggactttatcaaatgggccaagaccaacgacattcctgtg
gggcctggtcgaggctcgggcgcaggatcgctggtggcctatgcgctgacaatcacggac
cttgatccgctgcgctattcactgctgtttgagcggttcctgaacccggaacgcgtgtcg
atgcctgacttcgatatcgacttttgcatggatcgccgggaagaggttatccgctatgtg
caggaaaagtacgggcgtgatcgcgtgggccaaatcatcacctttggcgctttgctgtcg
aaggcggctgtgcgcgatgtaggccgcgtgttgcagatgccctacgggcaagtcgatcgg
ctttcaaagttgatcccggttgagggtgtgaagcctgtcagcattgaaaaggcattggcg
gacgagccccggcttcgcgaagaggcgaaggccgaggaggttgttgagcggctattgaac
tatggtcaacaggtggaggggctgttgcggaatgcctcgacccacgcggctggtgttgtg
attggcgaccggtcgctggacaagttggtgccgctttaccgcgacccgcgctctgacatg
gcggcgacgcagttcaacatgaagtgggtcgagcaggccggtttggtgaagttcgatttt
ctagggctgaagacgctgacggtgattcagaacgcgctggatttgctggccgaacgtgat
gtcgagatcgacatcggggcgatcccgctggatgacgagaaaacttacgagctgtacgcc
aaggcgcgcacggtggcggtgttccaggtggaaagctcgggcatgatggacgcgcttcgg
cgcatgaaaccgacatgtatcgaagacatcgtggcactggtggcgctttatcgccccggc
cctatggagaacattccgcagtattgcgatgttaagaacggtcgggctgaacgtgagcgg
ctgcatcccaccatcgatcacattctggacgaaacgcagggcattatcgtctatcaggaa
caggtgatgcagatcgcccaagagatggccgggtatagtcttggcggtgcggatttgctg
cggcgtgcgatgggtaagaaaatccaagaggcgatggacgccgagcgtccaaagtttctg
gagggcgctgctaagaatgatgtcgacaagaagaaagcgttggaggtttggaaccttctg
gataagttcgccaactacggtttcaacaaatcccacgcggcggcttacgcggtggtcagc
tatcaaaccgggtggctgaaagcgaattatccagtcgagtttatggctggcgtcatgaat
tgcgatctgcacttaactgataagctggcgacctatgccgccgaggtgcgtttgccggaa
gaacgcggagggcttgggctggagattgtgccgccctgtgtgaatcggtcgagtgcgcgg
ttctcggtgattgacggcaagctggtttatgctttgggggcgctaaagaacgtcggcgtg
gaagcaatgcggttgatcgtcgaggcgcgcgaggacaaacccttcgtcaatgtcttcgac
attgcacgtcggtgcgatctgaagcggatcgggaagaggccgctggaaatgctcgcgcgc
gctggggcctttgatcagctggacccgaaccgtcgccggatgttccaatctctggatgcg
cttgcggcttattcggccgcgatccacgaacaacgggaaagcgctcaggtgtcactgttt
ggcgaggcgggagatgatttgccagagccgaggctatctccggtcgatgattggatgccg
aacgagcggctggcggaagagcagatcgcgattgggttctatctgtcggggcatccgctg
gatgattatgccaacgcattgaaaaagaagaactgtctgacactggcggaattgcagacc
aaggccgaggctgaaggtggcgcagtggcgcgtgttggggtgattgtctcggcgctgcag
gaacggaaatcggggcgaggcacgcggtttttccgtatgaatatttcggacccgaccggc
caggtttcggggatggcgctgttcccggatgacttcgataccgtgcgcaatgtgtttgat
cagacgacacaggtcgtcatgacactggaggcacggtttaatgaagggcagtttgatccg
attgcgcgaggtgtgacaccgattgatggtgtggtcgggacagtggctgccgggttgaat
gtgatgattgacaccgatgaggccgtgccgttgatccagtccgtgttgcaccggttccgt
gatgatgggtcagttaagaccaaaggtgaaatctgcattaccgctctggatattcttttg
ggcgacacgccacaggatgtacctgtgccaataggcgacaactggccagtatcgccgaaa
atcaaaggggcgctaaagtctttgcccggtgtggttctggttgaggatacttaa
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