Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_12135
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Entry
GKR98_12135 CDS
T10172
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Pathway
bosg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKR98_12135 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bosg03019
]
GKR98_12135 (pnp)
03016 Transfer RNA biogenesis [BR:
bosg03016
]
GKR98_12135 (pnp)
Enzymes [BR:
bosg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GKR98_12135 (pnp)
Messenger RNA biogenesis [BR:
bosg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GKR98_12135 (pnp)
Transfer RNA biogenesis [BR:
bosg03016
]
Prokaryotic type
tRNA degradation factors
GKR98_12135 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QMU58880
LinkDB
All DBs
Position
2417049..2419181
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AA seq
710 aa
AA seq
DB search
MFNEVKKSIQWGEETLTLETGKVARQADGSVIATYGETSVMANVTFAKSQKPGQDFFPLT
VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSH
DLVNDPDIVAMIAASAVLTISGAPFMGPIACARVGFEDGDYILNPTVDDMHELKNNPEQR
LDLVVAGTKDAVMMVESEAYELTEEEMLGAVNFAHAQIQPVIDLIIDLAEDTAKEPFEFA
APDYSDLFAAVKAAGEDQMRAAYAITDKQERTTAVGATRDAIKAALSEEQLEDENLGSAL
KKLESAVLRGDVVKHGRRIDGRATDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLG
TGDDEQMIDALSGTYRSNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALQAVLPA
ATDFPYTVRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLEDDGSYA
ILSDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKSGRMHILGE
MNKALSETSDFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGIIKI
ASPNGDAIKKAYDMIHSIVAEPEEGKVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKVVDQETGEEAKKEEAAD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatgaagtgaaaaaatccatccagtggggcgaagaaacgctgacactggaaacg
ggcaaagttgcccgccaggccgacggttcggtgatcgccacttatggcgagacctctgtc
atggccaacgtaacgttcgcgaaatcccagaagcccggacaggacttcttcccgctgacc
gttcactacaacgagaaatactatgccgccggtaaaatccctggcggctttttcaaacgc
gaagcgcgtccaacggaaaaagagacgctgacatcgcgtctgattgaccgtccgatccgc
ccgctgtttgtgcccggcttcaaaaacgaagttctggttatctgcaccgtgctttcgcac
gacctggtcaacgatccagacatcgtcgcaatgatcgccgcttcggccgtgctgactata
tccggcgcaccattcatgggcccaattgcctgtgcgcgtgttggctttgaagatggcgac
tacatcctgaacccaaccgtcgacgacatgcacgagctgaagaacaaccccgagcagcgt
ctcgatctggttgttgcaggcaccaaagacgccgtcatgatggttgagtccgaagcctat
gagctgacagaagaagaaatgctgggcgcggtcaactttgcccacgcacaaatccagccc
gtcatcgacctgatcatcgatctggccgaagacactgcaaaagagccgtttgaattcgca
gccccagactacagcgacctgttcgctgccgtcaaagcggctggagaagatcagatgcgt
gcggcttacgcgatcaccgacaagcaggaacgcacaacagccgttggcgccacccgcgac
gcgatcaaagcagcactttcggaagaacagcttgaggacgaaaaccttgggtcggctctg
aagaaactggaatcagcagtgctgcgcggcgacgtcgtcaagcatggccgtcgtatcgat
ggtcgcgcaacggatgaaatccgcgatatcgttgctgaaacaggcatcctgccacggacc
cacgggtcttcgctgttcacacgcggcgaaacccaaggtctggtcgtaaccacccttggc
accggcgacgacgaacagatgatcgacgcgctgtcgggcacctaccgctcgaacttcatg
ctgcactacaacttcccgccatactcggtcggcgaagttggtcgtttcggcttcacaggc
cgtcgcgaaatcggtcacggtaaactggcatggcgcgcgcttcaggcggttctgcctgcg
gcaaccgacttcccatataccgtgcgcttggtttccgagatcactgaaagcaatggctcc
tcgtcaatggcgtcggtctgcggtggctccttgtcgatgatggacgcgggcgttccgctg
aagtcggctgtggctggtgtagctatgggtctggttctggaagatgacggctcttatgcg
atcctgtcggacatcctcggtgacgaagaccaccttggcgacatggatttcaaagtggcg
ggcaccgaaaacggcattacgtccttgcagatggacatcaaggtcgcaggcatcacgccc
gagatcatggagaaagctctggcacaggcgaaatctggccggatgcacatcctgggtgag
atgaacaaggcgctttccgaaacttccgacttctcggttcacgccccacgcatcgaaacg
atgcaggtgccaaccgacaagatccgtgaagtgatcggctcgggcggtaaagtcatccgc
gagatcgtggaagtctccggcgccaaggtcgacatcaacgacgacggcatcatcaaaatc
gccagcccgaacggtgacgcgatcaagaaagcctacgacatgatccattcgatcgtggcc
gagccggaagaaggcaaagtctacaaaggcaaagtcgtgaagatcgtcgatttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggccttgtgcacgtcagccagattgaaaatcgc
cgcctgaaccatccatcggatgttctgaaggaaggtcaggaagtctgggtcaaactgctg
ggctttgatgatcgcggcaaggttcgcctgtcgatgaaagtcgtcgatcaggaaaccggt
gaagaagccaagaaggaagaagcagccgactaa
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