Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_17070
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Entry
GKR98_17070 CDS
T10172
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Pathway
bosg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKR98_17070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bosg03019
]
GKR98_17070
Enzymes [BR:
bosg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GKR98_17070
Messenger RNA biogenesis [BR:
bosg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GKR98_17070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QMU59737
LinkDB
All DBs
Position
3413710..3414942
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AA seq
410 aa
AA seq
DB search
MDFDMLGLQPRLVAKLAEQGIKDPTPIQKKAIPHAMNGRDVMGLAQTGTGKTAAFGLPLI
HTLTKLGVKPEAKCAHGLILAPTRELAKQISDNMRAYTQDTHLKVNLVVGGASINPQMQR
LGKGTDLLVATPGRLIDLLDRRAVRLNQTKFLVLDEADQMLDMGFIHALRRIAPLLSKDR
QTMLFSATMPKQMAELSTAYLTNPVRVEAAPPGKPADKVSQGLHYIAQAEKTGLLKEYLD
KHREELALVFARTKHGSERLMKSLVAAGFAAGSIHGNKSQGQRERAIRQFKDGELKVLVA
TDVAARGLDIPGVRHVYNYDLPNVPDNYVHRIGRTARAGLSGQAVAFCSPEEVGALRQIE
KTMGKAIPVIGGRAWEPVRGQKPDNKGNKGKPGGQRRRNRPRRSKRKSAA
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatatgctggggcttcagccccgccttgtagcgaaacttgctgaacaaggt
attaaagacccgacccctatccagaagaaagccatcccgcatgccatgaatggccgcgat
gtgatggggctggcgcaaaccggcacgggcaaaacggcggctttcgggctgccattgata
cacacattaactaagcttggcgtgaagcccgaggcgaaatgcgcccacggattgatcctt
gcgccgacgcgcgagctggccaagcaaatctcggacaatatgcgcgcctatacacaagac
acgcatctgaaggtgaaccttgtagtgggcggcgcgtcgatcaatccccagatgcagcga
ttaggtaaaggtaccgaccttctggtggcgacaccgggtcggttgatcgacctgttggat
cgccgggctgtgcgcctgaatcagactaaatttctggtgctggatgaggctgaccagatg
ctggacatgggctttattcatgcgctgcgtcggattgctccgctgttgtccaaagatcgt
cagacgatgttgttttcggccactatgcccaagcaaatggcagagctttcaacggcttat
ctgaccaacccggtacgagttgaagcggcgcctccgggcaagccagcggacaaagtttcc
cagggactgcactatattgcgcaggccgagaagacgggtttgttgaaagaatatctggat
aagcaccgcgaagaactggcgctggtgtttgcgcgaaccaagcatggttcagagcgtttg
atgaagtcgctggttgcggctgggtttgcggcaggatcaattcacggcaacaaatcacag
ggtcaacgggagcgggcgatccggcagtttaaggatggcgaattgaaggttctggtggcg
acggatgtggcggcgcgggggttggatattcccggggttcggcacgtttataactatgat
ctgccaaatgtgccggacaattatgttcaccggattgggcgcacggcgcgggccggtttg
agcgggcaggcagtggcgttttgttcgcctgaggaagtgggtgcgctgcgccagattgag
aagactatgggcaaggcgataccggtgattgggggtcgcgcatgggagcctgttcggggg
caaaagcctgataacaaaggcaataaaggcaagcccggcgggcagagacgccgcaacaga
ccgcggcgcagcaagcgcaaatctgcagcataa
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