Bradyrhizobium ottawaense: CIT37_06240
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Entry
CIT37_06240 CDS
T05524
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bot
Bradyrhizobium ottawaense
Pathway
bot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT37_06240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bot03019
]
CIT37_06240
Enzymes [BR:
bot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIT37_06240
Messenger RNA biogenesis [BR:
bot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIT37_06240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
DUF8086
HEM4
Motif
Other DBs
NCBI-ProteinID:
AWL91847
UniProt:
A0A2U8P2D4
LinkDB
All DBs
Position
7760275..7761873
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AA seq
532 aa
AA seq
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MRRAPAFDMERTPLLTSFQDFGLAEPIARALQEENYVTPTPIQAQTIPTALTGRDVVGIA
QTGTGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSS
TLAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGF
INDIRKIVSKLPIKRQTLFFSATMPKDIAELTNAMLRDPARVAVTPVSSTAERINQRIVQ
VDFSAKPAFLTKLLKDEPVNRALVFTRTKHGADKVVKSLEKAGIPASAIHGNKSQNHRER
TLAQFRSGEIRTLVATDIAARGIDVDGISHVINFDLPNVPETYVHRIGRTARAGADGTAI
SLVAGGEELSYLRDIERLIKVALPREDLRTDAGRRDAGPPAPQQRQGRGGRPGQRPQGAR
HGEGRHGDGRRSDERHSDGRHHSAGKHGDGRPGEGRHGGEARHADGRPGNGPKGSKGSRR
PRSGGKPHSSAGSRPEQRSAHSAGAADGIQGVAFLRRESRPNGQPNRKPYSH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggcgcccgcttttgacatggaaagaacccctcttttgacttcgtttcaggac
ttcggcctcgccgaacccatcgcgcgcgctcttcaagaagagaattacgtcacccccacc
cccatccaggcccagaccattcccacggcgctgaccggccgcgacgtcgtcggtatcgcc
cagaccggtaccggcaagaccgcgtccttcgcactgccgatcctgcaccgcctgctcgag
caccgtatcaagccgcagcccaagacgacccgcgtcctggtgttgtcgccgacccgcgag
ctgtccggccagatcctcgacagcttcaacgcctatggccgtcacatccgcctgtcctcg
acgctcgccatcggcggcgttccgatgggccgtcaggtccgctcgctaatgcagggcgtc
gaagtgctggtcgccacccccggccgcctgctcgacctcgtgcagagcaacgggctgaaa
ctgtcgagcgtcgagttcctcgtgctcgacgaggccgaccgcatgctcgacatgggcttc
attaacgacatccgcaaaatcgtctccaagctgccgatcaagcggcagacgctgttcttc
tcggccaccatgccgaaggacatcgccgagctgacgaacgcgatgctgcgggaccccgcc
cgcgtcgcggtgaccccggtctcctcgaccgccgagcgcatcaatcaacgcatcgtccag
gtcgatttctccgccaagcccgccttcctgaccaagcttctgaaggacgagccggtcaac
cgcgccctggtcttcacccgcaccaagcacggcgcggacaaggtggtgaagtcactcgag
aaggccggcatccccgccagcgccatccacggtaacaagtcgcagaaccatcgcgaacgg
acgctggcccagttccgctcgggcgagatccgcaccctggtcgccaccgacatcgccgcc
cgcggcatcgacgtcgacggcatcagccacgtcatcaatttcgacctgcccaacgtgccg
gaaacctacgtccaccgcatcggccgcaccgcgcgcgccggcgccgacggcaccgcgatc
tcgctggtcgcgggcggcgaggaactcagctatctccgtgacatcgaacggctgatcaag
gtggcattgccgcgcgaagatctccgcaccgacgccggccgccgcgatgcgggtcctccc
gcgccgcagcaacgacagggccgcggaggccgcccgggccaacgtccgcaaggcgcaagg
cacggcgagggacgccacggtgacgggcgccgtagcgacgaacgacattccgacggacgc
caccatagcgccggcaagcacggcgatggacgccccggtgaaggccgacatggcggcgaa
gcgcgacatgctgacgggcggcccggcaatggcccgaagggctcaaaggggtctcgtcgt
ccacgctctggcgggaagccgcattcttctgcaggcagtcgtccagaacagcgttccgcg
catagcgccggggcagctgatgggatacaaggcgttgcctttttgcgccgtgagagtcgg
ccgaacggccaaccgaaccgcaaaccctattcgcactag
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