KEGG   Bradyrhizobium ottawaense: CIT37_20760
Entry
CIT37_20760       CDS       T05524                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bot  Bradyrhizobium ottawaense
Pathway
bot03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bot00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CIT37_20760 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bot03400]
    CIT37_20760 (ligD)
Enzymes [BR:bot01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CIT37_20760 (ligD)
DNA repair and recombination proteins [BR:bot03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CIT37_20760 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AWL94321
UniProt: A0A2U8P9A6
LinkDB
Position
2172794..2175481
AA seq 895 aa
MLQKLSTYRQKRDFEKTPEPSGKTAVTPSKQRRFVIQKHDASRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPERGFK
KGDLKFTLHGDKLQGSWVLVRMRNDRTGGKRTNWLLIKHRDEFVREGAKNDILDEDKSVA
SGRAMEQIAEGKGRAPKPFMLAKGAKTKADAVWQSNRAEEAKGQTVKPAPRTALKGGKIS
KSGAAKKKATTATSGKKVTEMPDFVPPQLCTSVERPPGGEGWCHEIKFDGYRVQLRVEDG
KATLKTRKGLDWTDKFASIANEAAALPDVMIDGEIVALDHDGAPNFSSLQAALSDGKTEE
LIFFAFDLLFAEDLDFRRLPLGERKARLKQLLGARRRKSAQIRYVEHFESGGDAVLQSAC
KLELEGVVSKKLEAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRGDHL
VFVGMVGTGFGADKVKRIMPSLKAMEAKESPFGGKNAPKKSREVHWLKPELVAEIEFAGF
TADGNIRQAAFKGLRQDKPAEEVEAETPVDTELAEPTPRKRAAKTAKRSKDTGTAEVMGV
VISKPDKELWPDGGDGEGVTKLDLARYFEAVGTWMIEHLKGRPCSIVRAPDGIGGETFFQ
RHAMQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLV
FDLDPAPDVEFADVVEAAKDMRQRLTDLGMESFCKTTGGKGLHVVVPLLHGARDKVSWKE
AKAFAQGVCQWMADDDPERYLLNMSKKLRKGKIFLDYLRNDRMSTAVAPLSPRARAGATV
SMPVTWAQVKSDLDPKRYTLRTVPGLLPRSKAWEGYDDAAASIKATIKKLAEKMK
NT seq 2688 nt   +upstreamnt  +downstreamnt
gtgctgcaaaaactctccacttaccgacagaagcgtgatttcgagaagacaccggagccg
tcgggcaagacggcggtgacgccgtcgaagcagcggcgcttcgtgatccagaagcacgat
gcgagccggctgcattatgatctcaggctcgaattcgacggcgtgttcaagtcctgggcg
gtgaccaagggtccctcgctcgatccgcacgacaagcggctggcggtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggcacgattccggaagggcaatacggcggcggc
acggtgatgctgtgggatcgcggcacctgggagtcggaagatcccgaacgcggcttcaag
aagggcgatctgaagttcacactgcatggggacaagctgcagggaagctgggtcctggtc
cgcatgcgcaacgaccgtaccggcggcaagcgcaccaactggctcttgatcaagcaccgc
gacgaattcgtccgcgaaggggccaagaacgacattctcgacgaggacaaatcggtcgcc
tccggccgtgcgatggagcagatcgccgagggcaaggggcgcgcgccaaagccgttcatg
ctggccaagggtgccaagaccaaggccgacgcggtctggcaatccaaccgggccgaggaa
gcgaaagggcaaacggtcaagccggcgccacgtacggcgttgaagggcggcaagatctct
aagagcggggcggcgaagaagaaggccacaactgccaccagtggcaagaaggtcaccgag
atgccggacttcgtgccgccgcagctctgcacctcggtcgagcggccgccgggcggcgag
ggctggtgccacgagatcaaattcgacggctaccgcgtgcagctccgggtcgaggacggc
aaggcgacgctgaagacgcgcaagggcctcgactggaccgacaagttcgcctcgatcgcg
aacgaggcggctgcgctgccggacgtgatgatcgacggggagatcgtggcgctcgatcac
gacggtgcgccgaatttctcctcgctccaggccgcgctgtcggacggcaagactgaagag
ctgatcttctttgcctttgacctcctgttcgcggaggatctcgattttcggcgtctgccg
ctcggcgagcgcaaggcgcggctgaagcagctgctgggagcgcgcaggcggaaatcggct
cagatccgctatgtcgagcatttcgagagcggcggcgatgcggtgctgcaatcggcctgc
aagctcgagctggagggcgtggtgtcaaagaagctggaggcgccctatcgctccggccgc
accgagagttggaccaaggcaaagtgccgtgctggccatgaggtcgtgatcggcggctac
aagaccaccaacggcaaattccgttcgctgatggccggcgtgcatcgcggcgatcatctt
gttttcgtcggcatggtcggcaccggcttcggcgcggacaaggtcaagcgcatcatgccg
tccctgaaggccatggaggccaaggagagccccttcggcggcaagaacgcgccgaagaag
agccgcgaggtgcactggctgaagccggaactcgtcgccgagatcgagttcgccggcttc
accgccgacggcaatatccgccaggccgcgttcaagggcctgcggcaggacaagcccgcc
gaggaagtcgaggcggagacgcctgtcgacaccgagctcgccgagcccacgccccgcaag
cgcgcggcgaagacagccaagcgatcgaaggacaccggcaccgccgaggtgatgggcgtc
gtcatctccaagccggacaaggagctgtggcccgacggcggtgacggcgagggcgtgacg
aagctggatctcgcgcgctatttcgaggcggtcgggacctggatgatcgaacatctgaaa
gggcgcccgtgctcgatcgtgcgtgcgcccgacggcatcggcggcgagacgttcttccag
cgtcatgccatgcagggcacctcgaatttgctcgagctggccaaggtctcgggcgatcgc
aagccgtatttgcagatcgatcgcgtcgaagggctggccgccgtcgcgcagatcggcggc
gtcgagctgcatccctggaactgcgcgcctgatgcctacgatacgccgggccggctggtg
ttcgatctcgatccggcgccggatgtggagttcgccgatgtcgtcgaggccgccaaggac
atgcgtcagcggctcacggacctcggcatggagagcttctgcaagaccacgggcggcaag
ggcctgcacgtggtggtgccgctgctccacggcgcgcgcgacaaggtgagctggaaggaa
gccaaggccttcgcgcagggcgtctgccagtggatggccgacgacgatccagagcgctat
ctgctcaacatgtcgaagaagctacgcaaggggaagatcttcctcgactatctccgtaac
gaccggatgtcgacggcggtggccccgctgtcgccgcgtgcgcgggccggagccacggtt
tcgatgcccgtcacgtgggcgcaggtcaagagcgatctcgatccgaagcgctatacgctg
cggaccgtgccgggcctgctgccgcggtcgaaggcgtgggagggctatgacgatgcggcc
gcgtcgatcaaggcgacgatcaagaagcttgcggagaagatgaagtag

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