Bradyrhizobium ottawaense: CIT37_22505
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Entry
CIT37_22505 CDS
T05524
Name
(GenBank) VCBS domain-containing protein
Organism
bot
Bradyrhizobium ottawaense
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_4
Big_9
ORF_2_N
PQQ_2
HemolysinCabind
Motif
Other DBs
NCBI-ProteinID:
AWL94620
UniProt:
A0A2U8PAS2
LinkDB
All DBs
Position
2552408..2562223
Genome browser
AA seq
3271 aa
AA seq
DB search
MATQTTGGGSTVSFGNTPQANTDIFSFTEDASNILILNVLANDLGGAAKTLFSLDNGTSA
SASTKNYAPADLLVKDVAYSSDAAGMAATGDRSALGARIWIEADGTVHYDKGDINVQLQA
LATGQTLTDTFTYAIQLGNGTLSWATVTLQFNGANDSVIITSSPQSGSVVEDANTTPNIS
DSESAAGTISFNDADLGDTHSASFAAASSNTTSLGAFSLDSVNETANAANGSVQWHYNLN
NAAAQYLAAGQTITESFVVTINDGHGSTATQTVTVTITGTNDSATVSSEAKSVTEGDAAA
ALNTSGQLSIIDPDTGQAHVVAQSNVHGTYGDFSIDANGAWSYTGNGAHDELTAGQQVQD
QFTVTSQDGTASGIVTVTITGSNDAATVSSDSKSVSEGNAASALNASGQLTIVDPDSGEA
HVVAQTNAHGTYGDFTIDANGAWSYTGNGAHDELTAGQQVQDQFMVTSQDGTATGTVTVT
ITGSNDAATVSSDSKSVTEGGTAAALNTSGQLSITDPDTGEAHVVAQSNVHGTYGDFTID
ASGAWSFTGNGAHDELTAGQQVQDHFTVTSQDGTASGTVTVTITGTNDAATVSSDSKSAT
EGDTPAALNTSGQLTIVDPDSGEAHLVAQSNVHGTYGDFSIDANGAWSYTGNGAHDELIA
GQQVQDQFTVASQDGTASGTVTVTITGSNDAATVSSDSKSVTEGDTAAALNTSGQLTITD
PDSGEAHVVAQSNVHGTYGDFTIDASGAWSYTGNGAHDELTAGQQVQDQFTVTSQDGTAS
GTVTVTITGSNDAATVSSDSKSVTEGDTAAALNTSGQLSITDPDTGEAHLVAQSNAHGTY
GDFSIDANGAWSYTGNGAHDELIAGQQVQDQFTVTSQDGTASGIVTVIITGNNDAATVSS
DSKSVTEGDTAAALNTSGQLTITDPDSGEAHVVAQSNVHGTYGDFTIDASGAWSFTGNGA
HDELTAGQQVQDQFTVTSQDGTASGTVTVTITGSNDAATVSSDSKSVTEGDTAAALNTSG
QLSITDPDTGEAHLVAQSNVHGTYGDFTIDANGAWSYTGNGAHDELTAGQQVQDQFTVTS
QDGTATGIVTVTITGSNDAATVSSDSKSVTEGDTAAALNTSGQLTITDPDSGEAHVVAQS
NVHGTYGDFTIDANGAWSYTGNGAHDELTAGQQVQDQFTVTSQDGTASGIVTVTITGSND
AATVSSDSKSVTEGDTAAALNTGGQLTIVDPDTGEAHVVAQTNAHGTYGDFTIDANGAWS
YTGNGAHNELTAGQLVQDQFTVTSQDGTASGIVTVTITGSNDAATVSSDSKSVTEGDTAA
ALNASGQLTITDPDSGEAHVVAQSNVHGTYGDFTIDASGAWSFTGNGAHDELTAGQQVQD
QFTVTSQDGTASGTVTVTITGSNDAATVSSDSKSVTEGDTAAALNTSGQLSITDPDTGEA
HLVAQSNVHGTYGDFTIDANGAWSYTGNGAHDELTAGQQVQDQFTVTSQDGTATGIVTVT
ITGSNDAATVSSDSKSVSEGDTAAALNTSGQLTIVDPDSGEAHVVAQSNVHGTYGDFTID
ANGAWSYTGNGAHDELIAGQQVQDQFTVTSQDGTATGTVTVTITGSNDAATVSSDSKSVT
EGDAAAALNASGQLTIVDPDTGEAHVVAQSNVHGTYGDFTIDANGAWSYTGNGAHDELTA
GQQVQDQFTVTSQDGTATGIVTVTITGSNDAATVSSDSKSVTEGDAAAALNASGQLTIVD
PDRGEAHVVAQSNVHGTYGDFSIDANGAWSYAGNGAHDELTAGQQVQDQFMVTSQDGTAS
GIVTVTITGSNDAATVSSDSKSVTEGDTAAALNTSGQLTIVDPDSGEAHVVAQTNAHGTY
GDFTIDANGAWSYTGNGAHNELTAGQQVQDQFTVTSQDGTATGTVTVTITGTNDAATVSS
DSKSVTEGDTASALNTGGQLTIVDPDSGEAHVVAQANAHGTYGDFTIDANGAWSYTGNGA
HDELIAGQQVQDQFTVTSQDGTATGTVTVTITGSNDAATVSSDSKPVTEGDTAAALNTSG
QLTVTDPDTGEAHVVAQSNVHGTYGDFTIDASGAWSYTGNGAHDELTAGQQVQDHFTVTS
QDGTASGIVTATITGSNDVATVSSDSKSVTEGDTAAALNTSGLLTIVDPDSGEAHVVAQS
NAHGTYGDFTIDANGAWSYAGSGAHDELTAGQQVQDQFTVTSQDGTASGIVTVTVTGSND
APVLNANGGSLSYAEGQAATAIDTALILSDVDSTNLTGATVAITGNFASGQDVLGFTNQN
GITGSYNASTGVLTLTGSSSVANYQAALRSVTYLNSGDNPSGATRTISYQVDDGQTASHA
SNIVNATVTVIPVNDAPVNTVPGAQTTNVNTTKAITGLGIFDADSDGASETITLSVTNGT
LTVSGGTAGISGSGTSTVTLTGTVSAINSTLASTVNYVPTSNFAGTSTLTMTTSDNGHSG
AGGALTDVDTVTISVTSPSPFALTTGTDTVFYASGTNTVTGTQSPLTLNNGDMLTGGSGT
DTLAVSGGGLGPFTFGDGAGSIGLTNFETISLSDSNSGNHTDTLTFLSTFQNGGTLTIDG
SGITGNGDLVVDASAVTSGSFVIMGSSGNGGDDTLKGGSGNDTINGGAGTGADRIVGGGG
ADALTGGGGNDTFAYLAVTDAGDHITDFSTSGDKLEFTVTAGRFVIGDVDTTVENVRTGN
NAALNLANTEVGIKTDASVTTATVQSTINSYSNITTGALFVFHNSTVGHAQVYYDANPSV
AGGATLVADLDNLTTLASITGTFSAADFAFGTALAPAGVSGEPINLGLTDSPAHQGQIAT
VTVGSVPAGWTLNGGMLLPDGNWTIETTDVSSLMVTSPVDFAGALHLDVTVTWMQPDGSA
VIETFADNVEAFAAGSAIIAISGDDYLTASSGSDLLVFSQPIGHDVIYNFEIAHDQIDLI
GYAGFKTFADVQTHLSADNDGNAVIALADGQTITLDGVDAGSLAADDFVFDFKPVVDNSG
TMTIGNGALLPLSGNIHNTGTISLNSTGAETDLQLVGHGILLEGGGQVLLSDNSENTVSG
TVSDVTLTNIDNTISGAGQLGGGTLILVNQGTINATGTNALEIDTGSNTVVNSGTIAASG
SGGLVIDSNVDNSGLLWAHGANITLNGSVSGSGTALMDGVATVEFGAASSAHVALDAAAT
GTIVLHDSFDFSGVVSGFDGDDHLDLLDVAFGDGTTASYVANQAGTGGILSVTDGVHTAN
ISLFGQYDPASFQTEADKNMGTLISYHEYLV
NT seq
9816 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagacaacgggcggcggcagcacggtttcgttcggcaatactccgcaagcc
aacacggacattttctcgtttacggaagacgccagcaacattctcatcttgaatgtgctg
gcaaatgaccttgggggcgcggccaagacgctgttctccctggacaatggaacgagcgcc
tccgcgtccaccaagaactacgcacctgcagatctgctggtcaaagatgtggcgtacagc
agtgatgccgccggaatggctgcaaccggtgaccgcagcgccctcggtgcacgcatctgg
attgaagcggacggcaccgttcattacgacaagggcgacatcaacgttcagcttcaggcg
ctggcgaccgggcaaacgctgactgacacattcacctacgctatccagctgggcaatggc
acgctcagttgggcgaccgtgacactccagttcaacggcgcaaacgactcggtcatcatc
acatcgagtccgcagagcggctcggtggtagaagacgcgaacaccacgccgaatatctcg
gattcggagagcgcggcgggcaccatcagtttcaacgatgccgatctcggcgacacgcat
tcggcctcgttcgcggcagcctcttccaacaccacgtcgctcggcgccttctcgcttgat
tctgtcaacgagacggccaatgccgccaacggctcggtgcaatggcattacaatctgaac
aacgccgccgcgcaatacctcgctgcgggccagacgatcaccgagagcttcgtggtgacg
atcaatgacggccacggctcgacagctacccagacggtgacggtcacgatcacaggcaca
aacgattcggctacggtctcttccgaggcgaagtccgtcaccgagggtgatgccgccgcc
gccctcaacacgagcggccaactcagcatcatcgacccggatactggccaggcccatgtc
gtggcgcaatcgaacgtccacgggacctacggcgacttcagcatcgatgccaacggcgcc
tggagctacaccggcaacggcgcgcatgacgagctcaccgccggccagcaggtgcaggat
cagttcacggtgaccagccaggacggcaccgcgagcggcatcgtgacggtcaccatcacc
ggcagcaatgatgcggccacggtctcgtcggactcgaagtccgtcagcgagggcaatgcc
gcctccgcgctcaatgccagcggccagctgacgattgtggatcccgacagcggcgaagcc
catgtcgtggcgcagacgaacgcgcacgggacctatggcgacttcacgatcgatgccaac
ggcgcctggagctacaccggcaacggcgcgcatgacgagctcaccgccggccagcaggtc
caggaccagttcatggtcaccagccaggacggcaccgccaccggcacggtgacggtgacc
atcaccggcagcaacgatgcggccacggtctcttcggactcgaagtctgtcaccgagggt
ggcacggcggcggcgctgaacaccagcggccagctcagcatcaccgacccggatacgggc
gaagcccacgtcgtcgcgcaatcgaatgtccacgggacctacggcgacttcacgatcgat
gccagcggcgcctggagcttcaccggcaacggcgcccatgacgagctcactgcgggccaa
caggtccaggatcacttcacggtgaccagccaggacgggaccgcctccggaacggtgacg
gtcaccatcaccggcacgaatgacgcggcgaccgtcagctcggactcgaagtccgccacc
gagggcgacaccccggcggcgctcaacacctcgggccagctcacgattgtggatcccgac
agcggcgaagcccatctcgtggcgcaatcgaacgtccacggcacctacggcgacttcagc
atcgatgccaacggcgcctggagctacaccggcaacggcgcgcatgacgagctcatcgca
ggccagcaggtccaggaccagttcacggtcgccagccaggacggcaccgcgagcggcacg
gtgacagtgaccatcaccggcagcaacgatgcggccacagtctcatcggactcgaagtct
gtcaccgaaggcgacacggccgccgcactcaacacctcaggccagctcaccatcaccgat
cccgacagcggcgaagcccacgtcgtcgcgcaatcgaatgtccacgggacctacggcgac
ttcacgatcgatgccagcggcgcctggagctacaccggcaacggcgcccatgacgagctc
actgcgggccagcaggtccaggaccagttcacggtcaccagccaggacggcaccgcgagc
ggcacggtgacggtgaccatcaccggcagcaatgatgcggcgacagtctcatcggactcg
aagtccgtcaccgagggcgacaccgcggcggcgctgaacaccagcggccagctcagcatc
actgacccggataccggcgaagcccatctcgtggcgcagagcaatgcccacgggacctac
ggcgacttcagcatcgatgccaacggcgcctggagctacaccggcaacggcgcccatgac
gagctcatcgccggccagcaggtccaggaccagttcacggtgaccagccaggacggcacc
gcgagcggcatcgtgacggtgatcatcaccggcaacaatgacgcggcgacggtctcgtcg
gactcgaagtctgtcaccgaaggcgacacggccgccgcacttaacacctcaggccagctc
accatcaccgatcccgacagcggcgaagcccacgtcgtcgcgcaatcgaatgtccacggg
acctacggcgacttcacgatcgatgccagcggcgcctggagcttcaccggcaacggcgcc
catgacgagctcactgcgggccagcaggtccaggaccagttcacggtcaccagccaggac
ggcaccgcgagcggcacggtgacggtgaccatcaccggcagcaatgatgcggcgacagtc
tcatcggactcgaagtccgtcaccgagggcgacaccgcggcggcgctgaacaccagcggc
cagctcagcatcactgacccggatacgggcgaagcccatctcgtggcgcaatcgaacgtt
cacgggacctatggcgacttcacgatcgatgccaacggcgcctggagctacaccggcaac
ggcgcccacgatgagctcaccgccggccagcaggtgcaggaccagttcacggtcaccagc
caggacggcaccgccaccggcatcgtcacggtgaccatcaccggcagcaacgatgcggcc
acggtctcttcggactcgaagtcggtaaccgaaggcgacacggccgccgcactcaacacc
tcaggccagctcaccatcaccgatcccgacagcggcgaagcccatgtcgtggcgcaatca
aacgtccacgggacctacggcgacttcacgatcgatgccaacggcgcctggagctacacc
ggcaatggcgcgcatgacgagctcaccgccgggcagcaggtgcaggatcagttcacggtg
accagccaggacggcaccgcgagcggcatcgtgacggtgaccatcaccggcagcaacgac
gcggccacggtctcatcggattcgaagtctgtcaccgagggcgacaccgcggcggcgctc
aataccggcggccagctgacgattgtggatcccgacactggcgaagcccatgtcgtcgcg
cagacgaacgcgcacgggacctacggcgacttcacgatcgatgccaacggcgcctggagc
tataccggtaacggtgcccacaatgagctcaccgccgggcagctggtgcaggaccagttc
acggtgaccagccaggatggcaccgcgagcggcatcgtcacggtgaccatcaccggcagc
aacgacgcggccacggtctcttcggattcgaagtctgtaaccgaaggcgacacggccgcc
gcactcaacgcctcaggccagctcaccatcaccgatcccgacagcggcgaagcccacgtc
gtcgcgcaatcgaatgtccacgggacctacggcgacttcacgatcgatgccagcggcgcc
tggagcttcaccggcaacggcgcccatgacgagctcactgcgggccagcaggtccaggac
cagttcacggtcaccagccaggacggcaccgcgagcggcacggtgacggtgaccatcacc
ggcagcaatgatgcggcgacagtctcatcggactcgaagtccgtcaccgagggcgacacc
gcggcggcgctgaacaccagcggccagctcagcatcactgacccggatacgggcgaagcc
catctcgtggcgcaatcgaacgttcacgggacctatggcgacttcacgatcgatgccaac
ggcgcctggagctacaccggcaacggcgcccacgatgagctcaccgccggccagcaggtg
caggaccagttcacggtcaccagccaggacggcaccgccaccggcatcgtcacggtgacc
atcaccggcagcaacgatgcggccacggtctcttcggactcgaagtccgtcagcgagggc
gacaccgcggcggcgctcaacaccagcggccagctgacgattgtggatcccgacagcggc
gaagcccatgtcgtggcgcaatcaaacgtccacgggacctacggcgacttcacgatcgat
gccaatggcgcctggagctacaccggcaacggcgcgcatgacgagctcatcgcgggccag
caggtgcaggaccagttcacggtgaccagccaggacggcaccgccaccggcacggtgacg
gtgaccatcaccggcagcaacgacgcggccacggtctcgtccgactcgaagtccgtcacc
gagggtgatgctgccgccgcattgaacgcctccggccagctcacgattgtggatcccgac
acgggcgaagcccatgtcgtggcgcaatcaaacgtccacgggacctacggcgacttcacg
atcgatgccaatggcgcctggagctacaccggcaacggcgcccatgacgagctcaccgcc
ggccagcaggtccaggaccagttcacggtgaccagccaggacggcaccgccaccggcatc
gtgacggtgaccatcaccggcagcaacgacgcggccacggtctcgtccgactcgaagtcc
gtcaccgagggtgatgctgccgccgcattgaacgcctccggccagctcacgattgtggat
cccgacaggggcgaagcccatgtcgtggcgcaatcgaatgtccacgggacctatggcgac
ttcagcatcgatgccaacggcgcctggagctacgccggcaacggcgcccacgatgagctc
accgccggccagcaggtgcaggatcagttcatggtgaccagccaggacggcaccgcgagc
ggcatcgtcacggtgaccatcaccggcagcaacgacgcggccacggtctcttcggattcg
aagtccgtcaccgagggcgacaccgcggcggcgctcaataccagcggccagctgacgatt
gtggatcccgacagcggcgaagcccatgtcgtcgcccaaaccaatgctcacgggacctat
ggcgacttcacgatcgatgccaacggcgcctggagctacaccggcaacggtgcccacaat
gagctcaccgccggccagcaggtccaggaccagttcacggtgaccagccaggacggcacc
gccaccggcacggtgacggtgaccatcaccggcacaaatgacgcggcgaccgtcagctcg
gactcgaagtccgtcaccgagggcgacaccgcctctgcgctcaataccggcggccagctg
acgattgtggatcccgacagcggcgaagcccatgtcgtcgctcaggcgaacgcgcacggg
acctatggcgacttcacgatcgatgccaacggcgcctggagctacaccggcaacggcgcc
cacgatgagctcatcgcgggccagcaggtccaggatcagttcacggtcaccagccaggat
ggcaccgccaccggtaccgtgacggtgaccatcaccggcagcaacgacgcggccacggtc
tcttccgactcgaagcccgtcaccgagggcgacaccgcggcggcgctgaacaccagcggc
cagctcaccgtcaccgacccggatacgggcgaagcccacgtcgtcgcgcaatcgaacgtc
cacgggacctatggcgacttcacgatcgatgccagcggcgcctggagctacaccggcaac
ggcgctcatgacgagctcaccgcgggccaacaggtccaggatcacttcacggtgaccagc
caggacgggaccgcctccggcatcgtgacggccaccatcaccggcagcaacgacgtggcg
acggtctcgtcggactcgaagtccgtcaccgagggcgacaccgcggcggcgctgaacacc
agcggcctattgacgattgtggatcccgacagcggcgaagcccacgtcgtggcgcaatcg
aacgcgcacgggacctatggcgacttcacgatcgatgccaacggcgcctggagctacgcc
ggcagcggcgcgcatgacgagctcactgcgggccagcaggtgcaggaccagttcacggtc
accagccaggacggcaccgcgagcggcatcgtgacggtgaccgtcaccggcagcaatgat
gcgccggtgctgaacgccaatggcggttcactgtcctatgccgagggtcaggccgcgacc
gcgatcgacacggcgctgatcctgtcggacgttgacagcacgaatctgaccggcgcgacg
gtcgcgatcacaggaaacttcgcctccggccaggatgtgctcggttttaccaatcagaac
ggcatcaccggcagctataacgccagcactggggtgctgaccctgacgggttcgtcgagc
gtggcgaactaccaggcggccctgcgctcggtgacgtatttgaactcgggtgacaatccg
tcgggcgcgacccgcaccatcagctatcaggttgacgacggccagacggccagccacgcc
agcaacatcgtgaacgcgacagtcacggtcattccggtcaacgacgcgccggtgaatacg
gttccgggagcacagacgacgaacgtcaacacgacaaaggcgatcacgggacttggcatc
ttcgacgccgactcggacggcgccagcgaaacgatcacgttgtcggtaaccaacggcacc
ttgaccgtttcaggaggtaccgcagggatcagcggcagcggaacgtcgacggtgacgctg
accggaacagtcagcgccatcaattctaccctggcctcgacggtcaactacgttccgaca
tcgaattttgccggaaccagcactctgaccatgacgacaagcgacaatggccacagcgga
gcgggtggcgcattgaccgatgtggatacggtgaccatttcggtcacgagccccagtccc
ttcgctctcacgaccggcaccgatacggtcttctatgcatcgggcaccaatactgtgacc
ggtacccaatctcccctaacgctaaacaacggtgacatgctgactgggggaagcggtacg
gacactctcgccgtcagtggtggcggtctggggccattcaccttcggcgatggtgcagga
agcattggcctgacaaacttcgaaacgatcagtttaagtgacagcaacagcggaaatcac
actgacaccctgacattcctttcgacattccaaaatggaggaacgctcacgattgacgga
tccggcattacggggaacggcgacctggtcgtagatgctagcgcagtcacgtctggatcg
tttgtcatcatgggcagctcaggaaacggcggcgatgataccctcaagggcggttctggt
aacgacaccatcaacggtggcgcaggcactggcgcggacaggatcgtgggtggtggtggc
gcagatgcgctgactggtggtggcgggaacgatacattcgcctatctcgctgtcaccgac
gcgggtgaccacatcaccgacttcagcacctcaggggataagctggaatttacggtaacc
gccggacggttcgtcattggtgatgtcgatacgaccgttgaaaatgtcagaacgggcaac
aacgctgcgctaaatctcgccaacacggaggtcggcatcaaaacagacgcatccgtgacg
acggcgacagttcaatcaacgatcaacagctactccaacatcaccacaggagccctattt
gtattccacaattcgacggtgggccacgcgcaagtttactacgatgccaatccgagcgtc
gcaggcggcgcgacactcgtcgccgatttggacaacctgaccactctggcgagcataacc
ggtactttcagcgcggcggattttgcgtttggaacggcccttgctcctgcgggggtgtcg
ggcgagcccatcaatctcggtctgacggactcgcccgctcatcagggtcaaatcgccacc
gtcactgtcggcagcgtgcccgcaggctggacattaaatggtgggatgctgctccccgat
ggcaactggacgatcgagacgactgacgtcagctcgctaatggtgacatcgccagtcgat
ttcgccggagcattgcatctcgacgtgaccgtgacctggatgcagccggatggctcggct
gtaatcgagacattcgccgacaatgttgaagcttttgcagcgggctccgccatcatcgcc
atttccggcgacgactatctcacagcgtcaagtggcagcgatctgctcgtattctcgcag
ccgatcggccacgacgtcatctataatttcgagattgcgcatgatcagatcgacctgatc
ggctacgccggcttcaagaccttcgcggacgtccaaacgcatctgtctgccgacaacgac
ggcaacgccgtcattgcgctggccgacggtcaaacgatcactctggatggcgtcgatgcc
ggctcgctcgcagcggacgacttcgtattcgacttcaagcccgtggtcgacaattcaggc
acaatgacgatcggcaacggcgcattgctgccgttatccggtaacatccacaatacgggc
acgatctcgttgaactcgacgggcgccgagaccgacctccaactcgtcgggcacggaatt
ttgctcgaaggtggcggtcaggtgctgttgtccgacaatagcgagaacacggtcagtgga
actgtttccgacgtcacgctgaccaacatcgacaataccatttcgggagccggacagctt
ggcggggggacattgatccttgtcaaccaaggtacaatcaacgcgacgggcaccaacgcg
ctcgagattgacaccggtagcaacaccgtcgtcaattccggaacgattgcggccagcggc
agcggcggactggtcatcgacagcaacgtggataattcagggctgctgtgggcgcatgga
gccaacatcactctcaatggcagtgtaagcggcagcggcaccgcgctgatggatggcgtg
gctacggtcgagttcggagcggcttcatctgcgcatgtcgcgctcgatgccgcagcgacc
gggacaatcgtgctccatgactccttcgacttcagcggagtcgtgtccgggtttgacgga
gatgaccacctggatctcctcgacgtcgcgttcggggacggcacgaccgctagttatgtc
gcaaatcaggccggcactggaggaatcctttcggtgactgacggagttcataccgccaat
atcagcctgttcggccagtacgatcccgcgagcttccagactgaggcagacaagaacatg
ggaacgcttatcagctaccacgagtatctcgtctga
DBGET
integrated database retrieval system