Bradyrhizobium ottawaense: CIT37_26600
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Entry
CIT37_26600 CDS
T05524
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bot
Bradyrhizobium ottawaense
Pathway
bot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT37_26600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bot03019
]
CIT37_26600
03009 Ribosome biogenesis [BR:
bot03009
]
CIT37_26600
Enzymes [BR:
bot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIT37_26600
Messenger RNA biogenesis [BR:
bot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIT37_26600
Ribosome biogenesis [BR:
bot03009
]
Prokaryotic type
rRNA helicases
CIT37_26600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWL95319
UniProt:
A0A2U8PC25
LinkDB
All DBs
Position
3415039..3417009
Genome browser
AA seq
656 aa
AA seq
DB search
MSFPALTPPLARALAERNYDSPTPVQLAVLADEAAGRDLLVSAQTGSGKTLAYGLAMAKD
LLGDAERFERAAAPLALIVAPTRELAMQVQRELAWIYQHAETRVVSCVGGMDPRREQREL
AAGAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRR
TLLFSATFPRGIVALAKQYQQQAFRIEVAGDEGGHADIEYRAIRIAPADAEHAVVNVLRF
YEAPSALVFCSTRDHVRHLQAALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVAT
DVAARGIDLPSLDLVIHADLPNDAEVMQHRSGRTGRAGRKGTSVLLVPPARRRRAELLLN
LAGVDADWGTAPQADEIRKLDHERMKDVLFTEETTADDLVLAQALLAERSGEDIAAALAR
LYRARLPSPEDILDPGERSGRPRDDRGRDNVRTPRDDGRTSRGDDRPAGPRSKSGKSSPR
HGMGEASVWFRANIGRRKNAEARWLLPMICRRGGIDKGDIGAIKIMDTTTEFEISERVAE
SFAVKIKRPDKEDNIRLEPMAGAPQQQAPAEERSHPPRRESRDSDHRERRDDRPRDKSEF
KPRSKPQGERGPKFDDAPSFGKKKHKNKPGHAEPSVTPWPAKGAPGKKPKKKKHRG
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttttccggccctgaccccgccgctcgcccgcgctttggccgagcggaactatgat
tcaccgacccccgttcagctcgccgtgctcgcggacgaagccgccggccgcgacctgctg
gtttcggcccagaccggctccggcaagaccctcgcttatggcctcgccatggccaaggat
ctgctcggcgatgccgagcggttcgagcgggcggccgcaccgctcgccctgatcgtggcg
ccgacccgcgagctcgcgatgcaggttcagcgcgaactcgcctggatctaccagcatgcg
gagacacgcgtcgtctcctgcgtcggcggcatggatccgcgccgcgagcagcgcgagctt
gccgcgggcgctcacatcgtcgtcggcacgcccggccggctatgcgatcatttgcgccgc
ggccgtctcgacatctcggaattgaaagcggtcgtcctcgacgaggccgacgagatgctc
aatctcggctttcgcgaggacatggagttcatcctcgagaccacgccggagacgcgccgc
accctgctgttctcggcgacctttccgcgcggcatcgtcgcgctcgccaagcaatatcag
cagcaggcgttccggatcgaagtcgccggcgacgaaggcggtcatgccgatatcgagtac
cgcgccatccggatcgcacccgccgatgccgagcatgcggtcgtcaacgtgctgcgcttc
tacgaggcgccgagcgcgctggtgttttgcagcacgcgcgatcacgtcaggcatttgcag
gcggcgctcctggagcgcggattttccgtcgtcgctctgtcgggtgaattgacgcagaac
gaacggaccatggcgttgcagtcgctgcgtgacggccgcgcgcgcgtttgcgtcgccacc
gacgttgccgcccgcggtatcgacctgccgagcctcgacctcgtcattcatgccgacctg
cccaacgacgccgaggtgatgcagcaccgctcgggccgaaccgggcgcgccggacgcaag
gggaccagcgtcctgctggtgccgcccgcccgccggcgtcgcgcagagctgctgctcaat
ctcgcaggtgtcgatgccgactggggcacggcgccgcaggcggacgaaatccgcaagctc
gaccatgagcgcatgaaggacgtgctgttcacggaggagacgacggcggacgatctggtg
ctggcccaggcgctgctggccgagcggtcgggcgaggatatcgcagctgccttggcgcgg
ctttatcgcgcgcggctgccgtcgcccgaggacatcctcgatcccggcgagcgcagcggc
cggccgcgcgatgatcgcggtcgggacaatgttcgcacgccgcgcgacgatggccgcacc
tcacgcggcgacgatcgccctgcggggccgcgatcgaaatcaggcaaatcctcgccgcgt
cacggcatgggagaggccagcgtctggttccgcgccaacatcggacgacgcaagaatgcg
gaagcgcgctggctgctgccgatgatctgccgtcgcggcggcatcgacaagggcgatatc
ggcgccatcaagatcatggacaccacgaccgagttcgagatttccgagcgggtcgcggag
tctttcgcggtcaagatcaagcgtccggacaaggaagacaatatccgcctcgagccgatg
gcgggcgcgccgcagcaacaggcgcctgcggaggagcggtcacacccgccccggcgcgag
agccgcgacagcgatcatcgggaacgtcgcgacgatcgtccacgcgacaagagtgaattc
aagccgcgcagcaagcctcagggcgagcgcgggccgaaattcgacgatgctccgtccttc
ggcaagaagaagcacaagaacaagccgggtcacgcagagccgtcggtcacgccgtggccc
gcgaagggcgcgcctggaaagaagccgaagaagaaaaagcatcgcggctga
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