Bradyrhizobium ottawaense: CIT37_29665
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Entry
CIT37_29665 CDS
T05524
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bot
Bradyrhizobium ottawaense
Pathway
bot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT37_29665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bot03019
]
CIT37_29665
Messenger RNA biogenesis [BR:
bot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CIT37_29665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RMMBL
RNase_J_C
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AWL95844
UniProt:
A0A2U8PEB5
LinkDB
All DBs
Position
4001351..4003018
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AA seq
555 aa
AA seq
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MAKPEELVFAPLGGVGEIGMNLSIYGLGSRQQRAWMAVDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATQFSAALFEAKCAAERNAPKI
PVTVVPSGGRVDVGPFNVEFIPVAHSIPEAHALAIHTEAGTVLHTGDWKIDPTPTLGSPT
DEKRLRELGEEGVLALIGDSTNAVRDGRSPSEAEVARTIIDLVKAAKGRVAVTTFASNVA
RIKAVAAAAKAADREVVVVGRAMERVVQVARECGYLDGVQNFRSPEVYGHPQDKVLALCT
GSQGEPRAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGSIINNLVLQGVEIITD
RDHLVHVSGHPRRDELRDMIGWVKPRLLIPVHGEALHLNEHAKLARAAGVPRVLVVRNGD
LIKLGPGDPGIIGEVPSGRLYKDGTILEDSKSRAVVERRRMAFSGCAFVAIAMTEQGELA
DDPEVDLVGIPDKNRAGEPFDDLVFDAVVSTIEGLPKARRRDPDALGESVRRAVRAVINE
HWGKKPPCLVHVLTV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcccgaagaactggtgtttgcgccgctgggcggcgtcggcgagatcggcatg
aacctgtcgatctatgggctcggcagccgccagcagcgcgcctggatggcggtcgatctc
ggcgtctccttcggcgacgaagagcacctgccgggcatcgacctgatcatgcccgacatc
agcttcctggagaaggagcgcaagaacctgatgggcctggtgctgacccatgctcatgag
gaccatttcggcgcgatcatcgacctctggccgaagctgaaatgcccgatctacgcgacg
cagttcagtgcggccctgttcgaggccaaatgcgctgccgagcgcaacgcgccgaagatc
cccgtgacggtggtgccgtccggcggccgcgtcgacgtcggcccgttcaacgtcgagttc
attcccgtcgcccactccattcctgaagcgcatgcgctggcgatccacaccgaagccggc
acggtgctgcacaccggcgactggaagatcgatccgaccccgaccctggggagcccgacc
gacgagaagcgtctgcgcgaactcggcgaggagggcgtgctcgctctgatcggcgattcc
accaatgcggtgcgcgacggccgctcgccgtccgaggccgaggtcgcccgcaccatcatc
gatctggtgaaggccgcaaagggccgcgtcgcggtgacgaccttcgcttccaacgtcgcg
cgcatcaaggccgtcgctgccgctgccaaggccgccgaccgcgaggttgtcgtggtcggc
cgcgccatggagcgcgtggtgcaggtcgcgcgcgaatgcggctatctcgacggcgtgcag
aatttccgctcacccgaagtctacggccatccgcaggacaaggtgctggcgctgtgcacc
ggcagccagggcgagccgcgcgcggcgctggcgcgcatcgccaatgacgaccatcccgag
atcacgctgaaccgcggcgatagcgtcatcttctcctcgcgcacgatcccgggcaacgag
aaggcggtcggctcgatcatcaacaatctggtgctgcagggcgtcgagatcatcaccgat
cgcgaccatctcgtccacgtctccggccatccccgccgcgacgaattgcgcgacatgatt
ggctgggtgaagccgcggctcctgatccccgtccacggcgaggcgctgcatctgaacgag
cacgccaagctggcgcgcgccgccggcgtgccgcgcgtgctggtggtccgcaacggcgac
ctgatcaagctcggcccgggcgatcccggcatcattggcgaagtgccttccggccgcctc
tacaaggacggcacgatcctggaggattccaagtcccgcgccgtggtcgagcggcggcgc
atggcgttttccggctgtgccttcgtcgccatcgccatgaccgagcagggcgagctggcc
gacgatcccgaggtcgatctggtcggcatccccgataagaacagggcaggcgagcccttc
gacgacctcgtcttcgatgccgtggtctccaccatcgagggcctgccgaaggcgcgccgc
cgcgaccccgacgcattgggcgagtctgtgcgacgtgctgtccgggccgtgatcaacgaa
cattggggcaaaaagcccccctgtctggtacacgtactgacagtataa
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