Bradyrhizobium ottawaense: CIT37_30805
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Entry
CIT37_30805 CDS
T05524
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bot
Bradyrhizobium ottawaense
Pathway
bot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIT37_30805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bot03400
]
CIT37_30805
Enzymes [BR:
bot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIT37_30805
DNA repair and recombination proteins [BR:
bot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIT37_30805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
RecG_dom3_C
Cas3-like_C_2
AAA_30
UB2H
AAA_25
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWL96036
UniProt:
A0A2U8PE77
LinkDB
All DBs
Position
4236704..4239808
Genome browser
AA seq
1034 aa
AA seq
DB search
MLALHLLAQWTQSGRSGIVFLAESENRAERLGSVIHALDPSCEVLVFPRLNTLPFDQLEP
SHELAGRRASVLRRLAKSKKPLFLVSTAEAVMERLPLPASLSRLSVSLKVGGTFSEQDLE
TRLEALGYDLDDEPDYPGGALFHGQTFEIFPAGALGPFRIEHSDRAIRRIVAFDPNEHRI
IFETKELIVDPMSERLGLAGKRGKRANLFDYCGRAKWIADAGVPMHADGWFDTIEEAAPR
AEREREYLGRRDWKQLSRGMKVLPRASSFQTIPEFSKLTSSRKALRAFVEETRRAGSRLI
LAAAHEDDLRVMERMSGLKAPRCEDWDDAARGRSGEAALLADLDAGFVMPGKKPLVVVTA
SDVLGSRAHHPQPMARAWSAAFDHADVPEQGTVVVHLQRGLGVLDGLQTVNTGGGAMREM
IRLKFAGDNAVLVPPPDLALMWPYAAELGKLSLDKADGSTWWARRGEAEREIQVAGKALA
KHISQRRKRRGDKLVPPGSAYEKFVARFPYFTTTDQAKAIADVLDDLASGHPMDRVICGD
VGFGKTEVALRAAAAVVLSGKQVAIAVPTTVLARQHVATFQKRFAPFGIEVGNLSRATSG
AELRETKEGLRSGRIKVVIGTQALGGKDVRFDDLGLVIIDEEQHFGAAEKAKLSGLAKNV
HVLMMSATPIPRTLAAGLAGFRDLSVIASPPVHRLPVATRIAPLSDAAIASALLREQRRH
GQSFLICPRIQDLDPMLARVQAVAPDLRIVCLHGRLAADEIDDRMMSFVEGRADVLLATN
IVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGIRAFAHLLTETQSGQSEKRLAV
LEEFSRPGAGFAISERDLDLRGAGDLFSEQQSGHVQVFGPVLYSHLLKMASEKLDEGQAV
WVPDLNLPVADMLPETYVQSEPVRLELYARAARCTDEDDLEDLEEETSRRFGPLPKVARD
FFAAARLRLECKRRGIIRLDVGPEAAAATFLPGRLRKSKGRSLQRDGDRVVHYAKMQDAP
FERVEELFEVLDEG
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
gtgctggcactccatctgcttgcccaatggacgcagtccggacgcagcggcatcgttttt
ctcgccgagagcgagaacagggcggagcgcctcggcagtgtcattcacgcgctcgacccc
tcctgtgaggtgctggtatttccgcgcttgaacactctgccgttcgatcagctcgagccg
tcgcacgagctggcggggcgcagagcttccgttctcaggcgccttgcaaaatccaagaag
ccgctctttctcgtctcgacggcggaagccgtgatggagcgactgccgctgccggcgagc
ctgtcgcgcctgagcgtgagcctgaaggtgggcggcacgttctccgaacaggatcttgag
acgcgccttgaagccctcggatacgatctcgatgacgagccggattatccgggtggggcg
ctgtttcacggccagaccttcgagatttttcccgccggcgcgctggggccgttccggatc
gagcattcggatcgcgcgatcaggcggatcgtggcgttcgatccgaacgagcacaggatc
atcttcgagaccaaggagcttatcgtcgatcccatgtcggagcggcttggccttgccggc
aaacgcggcaagcgcgcgaacctgttcgactattgcggacgcgccaaatggattgccgat
gccggcgtgccgatgcatgccgacggctggtttgacacgatcgaggaggccgcgccgcgt
gcggaacgtgagcgcgaatatctcggacggcgcgactggaagcagctctcccgggggatg
aaggtgttgccgcgcgcgtcgtccttccagaccatcccggagttttcgaaattgacctcc
tcccggaaggcgctgcgtgccttcgtcgaggagacgcgccgggccggatcgcgactgatc
ctcgccgcagcgcatgaggacgatctgcgcgtgatggagcggatgagcggcctcaaggcg
ccgcgctgcgaagattgggacgacgcggcgcgcgggcgcagcggcgaggcagcgctgctg
gccgatctcgatgccggtttcgtcatgccggggaagaagcctctcgtcgtcgtgacggcg
tccgacgtgctcggcagccgggcgcatcatccgcagccgatggcgcgcgcctggagcgcg
gccttcgaccatgccgacgtgcccgagcagggtacggtggtcgtccatctccagcgcggc
ctcggcgtgctcgacggcctgcagaccgtgaacaccggcggcggcgcaatgcgggagatg
atccgcctgaagttcgccggcgacaatgcggtgctggtgccgccgcccgatctggccctg
atgtggccctacgcggccgagctcggcaagctctcgctcgacaaggcggacggcagcacg
tggtgggcccgccgcggtgaggccgagcgcgaaatccaggtggcaggcaaggcgctggcc
aagcacatcagccagcgccgcaagcggcgcggcgacaagctggttccgccgggctcggcc
tacgagaagttcgtcgcgcgtttcccttacttcacgacgaccgaccaggccaaggcgata
gccgacgtgctggacgatcttgcgtccggtcacccgatggaccgggtgatctgcggcgac
gtcggctttggcaagaccgaggtagcgctgcgtgcggcggccgccgtcgtgctgtcgggc
aagcaggtggcgatcgcggtgccgacgaccgtgctggcacggcagcatgtcgcaacgttc
cagaagcgatttgcaccgttcggcatcgaggtgggaaatctgtcgcgggcaacctcgggc
gcggagctgcgcgagaccaaggagggactgcgcagcggccggatcaaggttgtgatcggc
acgcaggcgctcggtggcaaggacgtcaggttcgacgatctcggcctcgtcatcatcgac
gaggagcagcatttcggcgcggccgagaaggccaagctgtccggcctcgccaagaatgtc
catgtgctgatgatgagcgcgacgccgatcccgcgcacgcttgccgcgggcctggccggc
ttccgcgacctcagcgtgatcgcatcgcccccggtgcaccggctgccggtcgcgaccagg
atcgcgccgctgtcggatgcggcgatcgcctccgcgctgctgcgtgagcagcgccgccac
ggccagagtttcctgatctgtccgcgcatccaggatctcgatccgatgctggcgcgggtg
caggcagtggcgccggacctgcgcatcgtctgcctgcacgggagactagcggccgacgag
atcgacgaccgcatgatgagcttcgtcgagggcagggccgacgtgctgctcgcgaccaac
atcgtcgagagcggcctcgacatcccccgtgccaacaccatcgtggtctgctggccggag
aagttcggcctcgcccagctgcatcagctgcgcgggcgcgtcggccgcggcggcatccgc
gccttcgcccatctgttgaccgagacgcagtccggacaatccgagaagcggctggcggtg
ctcgaagagttcagccggcccggcgcgggctttgccatcagcgagcgcgacctcgatctg
cgaggcgcgggcgacctgttctcggagcagcaatccggccacgtccaggtgttcgggccg
gtgctctacagccacctcctgaagatggcctcggagaagctcgatgaggggcaggcggtg
tgggtgcctgacctgaacctgccggtcgcggacatgctgcccgagacctatgtgcaatcc
gagccggtgcggctcgaactctatgcgcgcgccgcaagatgcacggacgaagacgacctc
gaagacctcgaagaggagacctcccgccgcttcggcccgttgccgaaggtcgcgcgcgac
ttcttcgccgcagccaggctcaggctggagtgcaagcgcagaggtatcatccgcctcgac
gtcgggcctgaagctgcggccgcgacgttcctgcccggacgcttgcggaagtcgaaggga
aggtcgcttcaacgcgacggcgaccgcgtggtccattacgccaagatgcaggatgcacca
ttcgagcgggtcgaggagttgttcgaggtcctggacgaggggtga
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