Bradyrhizobium ottawaense: CIT37_30915
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Entry
CIT37_30915 CDS
T05524
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bot
Bradyrhizobium ottawaense
Pathway
bot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIT37_30915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bot03400
]
CIT37_30915 (mfd)
Enzymes [BR:
bot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIT37_30915 (mfd)
DNA repair and recombination proteins [BR:
bot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIT37_30915 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_25
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWL96054
UniProt:
A0A2U8PEW3
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All DBs
Position
4262831..4266349
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLAPGRVLTLANVAEGAEGLVVSDLARAIAARPKKPAVSLAVVCRDGPRM
QQLERALQFFAPDLPVLQFPAWDCQPYDRVSPHGGILAQRLTTLARLASLTGSDKPLIVL
TTVNAIVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLEQPVRFDFFGDSLESIRTFDAETQRTLLDMRSLDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAPIAIEPQAE
DAVRERFKQIQDYYEARRDAMEHPGGGAIYKPLPPDRLYLTGEEWTRRESDMPLLRLTQF
SVPADGTSVIDAGARKGRDFAPERNDNTVNVFESVVSHVMALHAQRKKVVIALWSEGSRD
RMNSMLRDHKLAHTTSVNSWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEITSLAAGDIVVHVDHGIGRFVGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGGGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQQGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLVATKELNLVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPSITIGMPVLIPEDYVGDLSVRLSLYRRLADLDTEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRRANVGKIDAGPKGAVIAFRDNSFAHPDRLVSFIRSYGQAAKVRPDMKVV
FLQDWETPEERLTGTTEIMRQLAQLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagggaatgaaatctccggccgagctgctagcgcccggccgtgtgctgacgctt
gccaatgtcgcggaaggcgccgaaggcctggtcgtctccgatctcgcccgtgccatcgcg
gcgcggccgaagaagccggccgtcagccttgccgtggtctgccgcgacggcccgcgcatg
cagcagctcgaacgcgcgctgcagttcttcgctcccgatctgccggtgctccagttcccg
gcctgggactgccagccctatgaccgcgtctcgccgcatggcggcattttggcacaacgc
ctgaccacgctggcgcggctggcctcgctcaccggcagcgacaagccgctgatcgtgctg
accacggtgaatgcgatcgtgcagcgcgtgccggcgcgcgagctcgtcgcggcgcaggcg
ctgtcggtcgcgcccggcaacgtcgtaccgatggacaccatcgtcgcctggctcgagcac
aatggttacaaccgttcctcgaccgtgcgtgagcccggtgaatacgccgtgcgcggcggc
atcctcgatctgtttccggccggcctcgagcagccggtgcgcttcgacttcttcggcgac
agcctggaatcgatccgcaccttcgatgccgagacccagcgcacgctgctcgacatgcgc
tcgctcgacctcgtgccgatctcggaattccagctcgtcaccgacaccatccgccgtttc
cgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgatgcgctgtatgaagcc
gtcagcgaaggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgc
atggacacgctgttcgattatctgcaaggcgcgcccatcgcgatcgagccgcaggccgag
gacgccgtccgcgagcgattcaagcagatccaggactattacgaggcccgccgcgatgcc
atggagcatcccggcggcggcgccatctacaagccgctgccgccggaccggctctatttg
accggcgaggaatggaccaggcgcgagagcgacatgccgctgctgcggctgacgcagttc
tcggttccggctgacgggaccagcgttatcgacgccggtgcgcgcaagggccgcgatttc
gcgccggagcgcaacgacaacacggtcaacgtgttcgagtccgtggtcagccacgtcatg
gcgctgcacgcccagcgcaagaaggtcgtgattgcgctctggagcgaaggatcgcgcgac
cgcatgaattcgatgctgcgtgaccacaagctggcccataccaccagcgtcaacagctgg
cggacggtgcaggccaccccgcgcaacgagaccatgctggccgtgctcggcctcgaaagc
ggtttcgagaccgatgagatcgcgctcatcagcgagcaggacatccttggcgatcgcctg
gtgcggccgcgcaaggccagccgcaagctcgacaatttcatctcggagatcacgagcctt
gccgcgggcgacatcgtcgtccacgtcgaccacggcatcggccgcttcgtcggcctccag
accctcgacgtcgccggcgccccgcacgactgtctcgagctgcattatgccgccgagaca
aagctgttcctgccggtcgagaacatcgagctgctgtcgcgctacggctccgaccagacc
acggtcgagctcgatcgcctcggcggcggcggctggcagacccgcaaggcaaaactcaag
aaccgcatccgcgagatcgcgggcgagctgatcaagatcgccgccgcgcgtcatctgcac
gaggcgcccaagctgccggtgcagcagggcctgtacgacgagttctgcgcgcgcttcccg
tatgacgagactgaggaccagctaggggcgatcgaatccacgctgaaggatctcgaactc
ggccgtcccatggaccggctgatctgcggggacgtcggcttcggcaagaccgaggtggcg
ttgcgcgcggcctttgccgtcgcgctcgaaggcaagcaggtcgccgtggtggtgccgacc
acgctgctcgcgcgccagcacgcgaagactttcaccgagcgcttcaagggctttccggtc
aacgtggcgcaggcctcgcgcctggtcgcgaccaaggagctcaatctggtcaagaagggc
atcgccgacggttcggtcgacatcgtcgtcggcacccacgcgctgctcggcaaggccatc
aagttccgcgacctcggcctcgtcatcgtcgacgaggagcagcattttggcgtcactcac
aaggagcggctgaaggcgctgcgctccgaggtgcacgtgctgacgctgtcggcaaccccg
attccgcgcacgctgcagctggcgctgaccggggttcgcgagctctcgatcatcgcatcg
cccccggttgatcgcctcgcggtgcgcaccttcgtcgctccgcatgatccgctgatgatc
cgcgaggcgctgctgcgcgagcgctaccgcggcggccaggcgttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggatttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcgcacgggcagatgccgcccgccgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgacatcctgctgtcgaccacgatcgtcgagtccggcctcgacatcccc
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctatcag
ctgcgcggccgggtcgggcgctccaagctgcgtgcgtatgcgctgttcacgctgccggcg
cagcagaagatcaccgcgcaggccgagcgccggctcacggtgctgcaatcgctggagacg
ctgggcgcaggcttccagctcgcctcgcacgacctcgacatccgcggcgccggcaatctg
ctcggcgaggagcagtccggccacatcaaggaggtcggcttcgagctctatcagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtctccgagcccgccgccgaccgctgg
tcgccgtcgatcaccatcggcatgcccgtgctcattccggaggattatgtcggcgatctc
tcggtgcggctgtcgctgtaccggcggctcgccgatctcgacaccgaggaggagatcgag
aattttggcgccgagatgcgcgatcgcttcggcgtgctgccggacgaggtgcgctacctc
ttcaaggtcgccgcgatcaaggcgttctgccgccgcgccaatgtcggcaagatcgatgcc
ggcccgaagggcgccgtcatcgccttccgcgacaattccttcgcccatcccgatcgtctg
gtgagcttcatccgcagctacggccaggccgccaaggtgcggcccgacatgaaggtggtg
ttcctgcaggattgggagacgccggaagagcgcctcaccggcaccacggagatcatgcgc
cagctggcgcagctcgcggaaagcaagaaggcggcgtga
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