Heyndrickxia oleronia: I5818_00315
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Entry
I5818_00315 CDS
T07202
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bou
Heyndrickxia oleronia
Pathway
bou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I5818_00315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bou03400
]
I5818_00315 (mfd)
Enzymes [BR:
bou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I5818_00315 (mfd)
DNA repair and recombination proteins [BR:
bou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I5818_00315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQZ05051
LinkDB
All DBs
Position
61276..64806
Genome browser
AA seq
1176 aa
AA seq
DB search
MKDLQQIILQQDEIGSVITGIEAGLKEQLVAGLSGSSRALFIASIYQKVHQSIIIVTYNL
HQAQKLYDDLQQFISDKSLYIYPANELIAAEIGIASPELKGQRIEALNFLTSKAKGVLIV
PMAGLRRILPTPNIWKGYQISFQVGNEIDLENILVNLNTMGYSRNEMVSAPGEFSLRGGI
LDIYPLTEANPIRIELFDTEIDSIRTFSIENQKSVKKLDKVMIGPATESPVDPAQLPMIA
DKLEKGLSKTLKKVKSEASKERLVQNIGYDLELLRNGQKPEQFFKYLSLAYEASTSLLDY
VSGKGILILDEFSRIQEINDQLVNEEAEWFTSLLEEGQIVHDIEVSHSLTKLLAQTNLSK
IYFSLFLRHIPNTSPQNILNITCRPMQNFHGQMHVLKAEIVRWKKGRFTVVFLGSDKNRV
KKLHSVLEDYDIEAAVVEDQGKILPSTIQIIEGGLNTGFELSMIKLAVITEEELFNKSTK
KTARRQKLSNAEKIKSYSELKVGDYVVHVNHGIGKYLGIETLIINGVHKDYLHLRYQGSD
KLYVPVEQIELVQKYVGSEGKEPKIYKLGGSDWKRVKKKVQSSVQDIADDLIKLYAEREA
AKGIAFSPDGDLQREFEATFPYQPTEDQLRSVQEIKRDMERIRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAFLVPTTILAQQHFETIKERFQDYPINIGLLSRFRTKKQQTETLK
GLKSGTVDIVVGTHRLLSKDVQYHDLGLLIIDEEQRFGVNHKEKIKQLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGHLVREAIERELSRNGQVYFLYN
RVEDIERKAEEISALVPDARVTYAHGQMTESELESVILSFLEGEYDVLVTTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVSEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEERKGQGQPTVPAF
EVELEIDAYIPDTYISDGHQKIEMYKRFRGITQLEEVEELKEEMMDRFGEYPSQVGLLFT
VAEMKVYAQEAMLESIKQIKQQVTILMSEQGTQQVDGPKVVSQLNKYGRAVGFGMDGNKL
KITLNIKGLDQEKWLSVAYEIIKEVNSSLKTKEHVI
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggatttacagcaaattattttacagcaagatgagatagggtctgttatcacggga
attgaggcaggattaaaggaacagcttgtagcgggattatcaggatcctctagggcgcta
tttatcgcttctatttatcaaaaagtccatcaatccattattattgtgacctataatctt
catcaagcacaaaaattatatgatgatttacaacaatttatctccgataaatcgctatat
atatatccggcaaacgagttgattgccgctgaaattggaattgctagtccagagttgaaa
ggtcaaagaattgaagcgctaaactttttgacttctaaagcaaaaggtgtcttgattgtt
ccaatggctggcttacgtaggatccttcctacaccaaatatttggaaaggctatcaaatt
tcttttcaagtaggtaatgaaatagatttagaaaatatattagtaaacttaaatactatg
gggtacagtcgaaatgagatggtgagtgctcctggagagtttagtttgcgtggtggaatt
ttggatatttatcctttaacagaggctaatccaatccgtattgagctttttgataccgag
attgactccattcggactttttcaattgaaaaccaaaaatcagtgaaaaagctagataaa
gtaatgatcggtccggcaacagagtcccctgtagaccctgctcaactaccaatgattgca
gataaacttgaaaaaggtttatctaaaacattaaaaaaagtgaaaagtgaggcttctaag
gaacgattagttcaaaatataggctatgatttggaattacttcgaaatggtcaaaaacca
gaacaattttttaaatacttatctttagcctatgaagcgtctaccagtttgctagactat
gtttctggtaagggaatattaattcttgatgaatttagccgtatccaggaaataaatgat
caattagttaatgaggaagcggaatggtttacctctttattagaggaagggcaaattgtt
catgatattgaggtatcccatagtttaacaaaattattagctcaaacgaatttatcaaaa
atttatttttctttatttttgagacatatccctaatacgagtccacaaaacattttaaat
atcacttgtcgaccaatgcaaaacttccatggacaaatgcatgtcttaaaggcggaaatt
gttcggtggaaaaagggacgttttactgttgtttttctaggtagtgataagaatcgtgtc
aaaaaacttcatagtgtcttagaggactatgatattgaggcagcagtagttgaagatcaa
ggcaaaatcttaccctctacaatacagattattgaaggtgggttaaatacgggctttgag
ctatcaatgataaaattagctgttattacagaggaagaactatttaataaaagcacaaaa
aaaacagctagacgtcaaaaattatcaaatgctgaaaagataaaaagctattcggagctt
aaagttggagattacgttgttcatgtaaatcatggaatagggaagtatttgggaattgaa
acattaattattaatggggttcataaagactatctccacctgagatatcaaggaagcgac
aagctatatgttccggttgagcaaattgaacttgttcaaaaatatgttggttcagaggga
aaagagcctaaaatttataaattaggcggaagtgattggaagcgggttaagaagaaagta
caatcctctgttcaagatattgcagatgatttaattaaactgtatgcagaaagggaagcc
gcaaaagggattgccttttcaccggatggtgaccttcaaagagaatttgaagcaacattc
ccataccagccgacagaggatcaactgcgctctgtacaggagattaaacgggacatggaa
agaattagaccaatggatcgattgctatgtggagatgttggctatggaaaaacagaagta
gcaattcgtgcagcatttaaggcaataatggatgaaaagcaagtggcttttttagtacct
acaactattttagcgcaacagcattttgaaactattaaagagcgctttcaggactatcca
attaatattgggctactcagtcgctttcggacaaaaaaacaacaaacagagactctaaaa
gggttaaaaagtgggacggtagacattgttgttggaacgcatcgattattatcaaaggac
gttcaatatcatgatttagggctgcttattatagacgaggaacagcggtttggtgtaaat
cataaagaaaagattaagcaattaaagacaaatgttgatgtgttaacattgaccgcgaca
ccaatacctaggacactgcatatgtctatgctaggtgttcgagatttatcggttattgaa
acacctccggaaaatcgttttcctgttcaaacctatgttatggagtacaatggtcattta
gtccgtgaggcaatagagcgtgaattatctaggaacggacaggtctattttttatataac
agggtagaggatattgaaaggaaagcagaagagatttcagcccttgtgccagatgccagg
gtaacctatgcacacggacaaatgactgaaagcgagctggaatcggtaattttaagtttt
ctagaaggggaatatgatgtccttgtgacaactactattattgaaacaggagtagatatt
ccaaatgtaaacacattgatcgtttttgatgctgatcgaatgggtttatcccagctatat
caattgcgtggtcgtgtaggaagatctaatcgtgttgcttacgcgtatttcacctatcga
aaggataaggtacttacggaggtatctgaaaaacgccttcaagctattaaggagttcacc
gagttaggttctggatttaaaattgcgatgcgggatttatccattcgtggagcgggaaat
atattaggtgctcagcaacatggatttattgattctgttggattcgatctgtattcgcaa
atgcttaaagaagcaattgaggaaagaaagggacaagggcaaccaactgtaccagctttt
gaggttgagttagaaattgatgcatatattcctgatacgtatatatctgatgggcatcaa
aaaattgaaatgtacaaaagatttagaggtattacacagcttgaggaagtagaggaatta
aaagaggaaatgatggatcgtttcggtgaatacccgtcacaggttggacttttatttaca
gtagctgaaatgaaggtgtatgcacaagaggcgatgctagaatcaataaaacagataaag
cagcaagtaacgatactaatgtccgaacagggaacacaacaggttgatggtccaaaggtg
gtcagtcaattgaacaaatatggtcgtgctgtcggatttggtatggatggaaataagtta
aaaattactttgaatataaaaggtttggatcaagagaagtggctttcagtcgcttatgaa
attattaaggaagtgaattcgtcacttaaaacaaaggaacatgttatttaa
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