Heyndrickxia oleronia: I5818_02830
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Entry
I5818_02830 CDS
T07202
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bou
Heyndrickxia oleronia
Brite
KEGG Orthology (KO) [BR:
bou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bou03016
]
I5818_02830
Enzymes [BR:
bou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I5818_02830
Transfer RNA biogenesis [BR:
bou03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I5818_02830
Prokaryotic type
tRNA splicing ligases
I5818_02830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Imm49
DNA_primase_lrg_N
Iec3-like_M
Motif
Other DBs
NCBI-ProteinID:
QQZ05479
LinkDB
All DBs
Position
complement(543276..544454)
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AA seq
392 aa
AA seq
DB search
MLTLKGKYNEAICYTDLLDDATIGQIITLCNQEFAKDSTIRIMPDTHSGKGCVIGTTMTI
QDKIVPSLVGVDIGCGLFVVKIKKGRIKLDFEKLDKLIRSRIPSGHGTHDKPVADFDLNE
IIAPIHRGWASRSLGTLGGGNHFIEINEGKDAIYLVIHSGSRSLGKEIAEYHQEVAYEKL
SALRKHLKEEMKAAHQKGHIDEANRLEKIRNDKKLPYELSYLEAQDLQNYLHDMKIAQAF
AQSNRAQMAETILKGMKWHKDVIDSFDCVHNYIDIDHLMLRKGATSAQMGEPLIIPLNMR
DGSILATGKGHPDWNYSAPHGAGRILSRSKAKAQISLESYQKAMKNVWTTSVSKKTLDEA
PQAYKPAKEIEKDIHDSVEIKEIIRPLYNFKG
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgttaacacttaaaggaaaatataatgaagctatttgctataccgatttattagatgat
gccacaattggtcaaatcattaccttatgtaatcaagaattcgcaaaggacagtaccatt
cgcattatgccagatacccattcaggaaaaggctgtgtgattggaacaacaatgacgata
caggataaaattgttccaagccttgttggggttgatatcggctgtggtctgtttgtagta
aaaattaaaaaaggtcggattaaacttgattttgaaaaactagacaaactcattcgtagc
cggatcccaagtgggcatggcactcacgataaacctgtcgctgactttgatttaaatgaa
attatcgcacctatacatcgcggctgggcatctcgtagtctcggcacacttggtggcgga
aaccattttattgaaataaatgaaggaaaagatgcaatctacttagtcatccatagtggc
agtcgatctcttggcaaagagattgccgagtatcatcaggaagtggcttatgaaaaatta
tccgcacttcgtaaacatttaaaggaagaaatgaaggctgcacatcaaaagggccatatt
gacgaagcaaataggctggagaaaattcgcaacgataagaaattgccctatgaattatcc
tatttagaggcacaagacttacagaactacttgcatgatatgaaaattgcgcaagctttt
gcccaatcaaaccgtgcccagatggcagaaaccattctaaagggaatgaaatggcataaa
gatgtcattgattcatttgattgtgttcataattacattgatatcgatcatcttatgcta
cgtaaaggggcaacctccgcccaaatgggagagccacttattattccattaaacatgcgt
gatggaagtattcttgcaacaggaaaaggacatcctgattggaactattccgctccacat
ggagcaggcaggatattaagccgctcaaaagcgaaggcacaaattagtcttgagagctat
caaaaggcgatgaaaaatgtgtggaccacatcggtatcaaagaaaacattggatgaggca
ccacaagcgtataaaccagcaaaggaaatcgaaaaagatatccacgattcagttgaaatt
aaagaaatcattcgcccactttataattttaaagggtga
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