Heyndrickxia oleronia: I5818_06740
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Entry
I5818_06740 CDS
T07202
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bou
Heyndrickxia oleronia
Pathway
bou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I5818_06740 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bou03019
]
I5818_06740 (rnr)
03016 Transfer RNA biogenesis [BR:
bou03016
]
I5818_06740 (rnr)
Enzymes [BR:
bou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I5818_06740 (rnr)
Messenger RNA biogenesis [BR:
bou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I5818_06740 (rnr)
Transfer RNA biogenesis [BR:
bou03016
]
Prokaryotic type
tRNA degradation factors
I5818_06740 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_RNR_1st
OB_Dis3
Abdominal-A
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QQZ06136
LinkDB
All DBs
Position
1355551..1357878
Genome browser
AA seq
775 aa
AA seq
DB search
MEEKIERILTYMKDEAYKPLTVQELEQVFGIEDSTDFKEFVKTLVSMEEKGLVVRTRSNR
YGLPEKMNLVRGKMTGHAKGFAFVTPEEPGLDDIFIPPHEKNNAMHGDIVLVRVSSQSSG
ARREGSVVRILERGITEIVGTYTESKYFGFVIPDDKKFGSDVFIPKNANAGAVEGHKVVV
HLTSYPEGHKNAEGEVVRILGHKNDPGVDILSVIHKHGLPQAFPEEVLEQANNVPDTIDE
SEIGNRRDLRQETIVTIDGADAKDLDDAVTVTRLENGHYKLGVHIADVTHYVTEGSPIDR
EALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVNRFTLSCEMEINDKGEVVNHEIFESI
IKTTERMTYSDVNKILVDKDEEVRDRYQMLVPMFETMEQLAEILRNKRMERGAIDFDFKE
AKVVVDEEGKPVDVVIRERSVAERLIEEFMLAANETIAEHFHWLDVPFMYRIHEDPKEEK
LQRFFEFITNFGLIVRGTANSVHPRALQEIIEAVQGKPEEMVISTVMLRSMQQAKYDPES
LGHFGLSTQFYTHFTSPIRRYPDLIVHRLIRTYLIEGKLDQATRAKWDASLQEIADHASK
MERRAVDAERETDELKKAEYMEDKVGEEFDGMISSVTNFGMFVELPNTIEGLVHVSYMTD
DYYHYDERQYAMIGEKTGNVFRIGDEITVRVINVNKDEHDIDFEIVGMKNNQARRGRQEQ
PRIVKVRSHKKDTKKKGPQGNSDNGDWSTRPPKAKKKKKKSFANTPKNKRSKKRK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaaattgaacgaattttaacatatatgaaagacgaagcctataaaccactg
actgttcaagaattggagcaagtatttggaattgaagattctacagattttaaggaattt
gttaaaacacttgtgtcaatggaagaaaaagggcttgtcgttcgaacaagaagtaatcgc
tatggtcttccagagaaaatgaatcttgtacgtgggaaaatgacaggtcatgcaaagggc
tttgcctttgttacacctgaagagccgggattagatgatatttttatcccaccccatgaa
aaaaataacgctatgcatggtgatatcgttttagtacgagtttcttcacaaagctcagga
gcgagaagagaaggatccgttgtccggattttagaacgtgggattacagaaatagtagga
acctatacagaaagcaaatatttcggatttgttattccagatgataaaaaattcgggagc
gatgtttttatcccgaaaaatgcaaatgcaggagcagttgaaggacacaaggtggttgtt
catttaacctcttatccagaagggcataaaaatgcagagggagaagtagtaagaatccta
ggacataaaaatgacccaggtgtagatattttatctgtcatacataaacatggtctcccg
caagcatttcctgaggaagtattagaacaagccaataatgtaccagatacaatcgatgaa
agtgaaataggaaatcgtcgcgatttacgccaggaaactatagttacaattgacggggcc
gatgcaaaagatttagatgatgctgttacggttactcgccttgaaaatggtcattataaa
ttgggcgtacatattgctgatgtgacgcattatgtgacagaaggctcaccgattgataga
gaagcattagaaagaggaactagtgtttatttagttgatcgcgtcattcctatgattcct
catcgattatcaaatggaatctgttcgttaaaccctaaagttaatcgttttaccttatcg
tgtgaaatggaaattaacgataaaggggaagtggttaaccatgagatttttgaaagcatc
attaaaacgactgaaagaatgacctactcagatgttaataaaatcttagtagataaagat
gaagaagttcgagaccgttaccaaatgttagttccaatgtttgaaacaatggaacaattg
gctgaaatccttcgaaataaaagaatggaacgtggtgccattgattttgattttaaagag
gcaaaggtcgttgtcgatgaagaaggaaagccagttgatgtagtcattcgtgaacgttca
gttgcagagcgtttaattgaagaattcatgcttgctgccaatgaaacaattgctgaacat
tttcattggctagatgttccattcatgtatcgaattcatgaagaccctaaagaagaaaag
ctacaacgctttttcgaatttattactaatttcggtttaattgttagaggaacagccaac
tctgtccatcctagagcattgcaagaaattattgaagcggttcagggcaaaccagaggaa
atggtcatctcgactgttatgcttcgttcgatgcaacaagcaaaatatgatcctgaaagt
ttaggacattttggcttatcaactcagttttatacacattttacatcaccgattcgtcgc
tatccggacttaattgtccatcgcttaattcgtacgtatctcatagaaggaaaactcgat
caagcgactagagcgaaatgggatgcatcacttcaagagatcgcggaccatgcctcaaaa
atggaaagacgggcagttgatgctgaacgtgaaacagatgagttgaaaaaagctgaatat
atggaagataaagtgggcgaagaattcgatggaatgattagttctgtaacgaattttgga
atgtttgttgaattgccaaatacaattgaaggtctagttcatgttagttatatgacagat
gattattatcattatgatgaacgtcaatatgcgatgattggtgaaaaaacgggaaatgta
ttccgcatcggtgacgaaattacggttcgagtcattaatgtaaataaagatgaacacgat
attgactttgaaattgtaggtatgaagaataaccaagcaagaagaggaagacaagaacag
cctagaattgttaaggttcgttcacataaaaaggatacaaagaaaaaaggaccacaagga
aattctgataatggtgattggtctacacgtccaccaaaagcaaagaagaaaaagaaaaaa
tcctttgctaatacaccgaaaaataagcgttcaaaaaaacgtaaataa
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