Heyndrickxia oleronia: I5818_21400
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Entry
I5818_21400 CDS
T07202
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bou
Heyndrickxia oleronia
Brite
KEGG Orthology (KO) [BR:
bou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bou03009
]
I5818_21400 (rlmD)
Enzymes [BR:
bou01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I5818_21400 (rlmD)
Ribosome biogenesis [BR:
bou03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I5818_21400 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
Methyltransf_12
Cons_hypoth95
Methyltransf_11
Ubie_methyltran
Methyltransf_32
Met_10
Motif
Other DBs
NCBI-ProteinID:
QQZ04212
LinkDB
All DBs
Position
complement(4272718..4274100)
Genome browser
AA seq
460 aa
AA seq
DB search
MKNDKDLLIKVKQQFPLTIKRLGINGEGVGYFKKKVVFVPGALPGEEVVVEVTKAHPKFA
EAIVKKVRKRSEHRVKAPCIVYEQCGGCQLQHLEYSQQLKEKRDILIQALERHTRFNIEE
MDIRPTIGMDNPWHYRNKSQFQLGEDHGKVIAGMYSIDSHRLINIPECIVQQPVTNKVTN
IVKQILADFRVPIYNEKTRKGIVRTIVTRVGVQTGQVQVMLVTARKELPRKEAILSEIKK
RLPEVVSVMQNVNPKRTSIILGDETIHLAGDKIVEERLEEFTYELSARAFFQLNPAQTVI
LYNEVKEAAALTGNEKIVDAYCGVGTIGLWLADKAGEIRGMDVIPEGIEDAKKNARKHER
KNASYFTGKAEDLMLKWVKEGWRPDVVVVDPPRTGCDEKFLDTILKVKPKKFIYVSCNPS
TLAKDLQMLGKKYEVEYLQPVDMFPQTAHVEVVGKLVLKN
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaatgataaagatcttttaataaaagtaaagcaacagtttccattaacaattaaa
cgtttaggaataaatggtgagggtgtcggctatttcaaaaagaaggtagtatttgtccca
ggtgctttacctggtgaagaagtagttgtagaagtaacaaaagcccatcctaaatttgca
gaagccatcgtcaaaaaggtacgaaaacgttcagaacatcgagtaaaagctccatgtatt
gtttatgaacaatgtggtggttgccagcttcagcatttagaatattcccagcagttgaaa
gaaaaacgagatatcctcattcaagcattggagcgtcatactcgatttaatatagaagaa
atggacattcgaccaaccattggaatggacaacccgtggcattatcggaataaaagccaa
ttccaattgggagaggatcatgggaaagttatcgctggtatgtatagtattgactcccat
cgattgattaatataccagaatgcatcgttcaacagcctgttacaaataaagtaacaaat
atcgtcaaacaaattttagcagattttagagtgccaatttataatgaaaagactcgaaaa
ggcattgtacgaaccattgtcactcgagtaggtgttcaaacaggtcaagttcaggttatg
ctagtaacagcaagaaaagaactgcctcgtaaagaagccattttatcagaaataaaaaaa
cgattacctgaagttgtatcagtgatgcaaaatgttaatccaaaacgaacctctattatt
cttggggatgaaaccatccatttagcaggtgataaaattgtagaggaacgtttagaggaa
tttacctatgaactgtctgcacgagcattttttcaattaaaccctgcacaaaccgtcatc
ctttacaatgaagtcaaagaggctgcagcattaacaggaaatgaaaaaattgttgatgcc
tactgtggagtaggaactattgggctttggcttgcagataaagcaggtgaaattcgagga
atggatgtaataccagagggaattgaagatgcgaagaaaaatgcaaggaagcacgaaaga
aaaaatgcatcttatttcactggaaaagcagaagatctcatgcttaaatgggtaaaagaa
ggctggagaccagatgtggtagtagttgatcccccgagaactgggtgtgatgaaaagttt
cttgacacaatcttgaaagtaaagccgaaaaagtttatttatgtatcatgtaatccatca
acccttgcgaaggatttgcagatgttgggaaagaagtatgaggttgaatatttgcagcca
gtagatatgtttccacaaacggcacatgtagaagtagttggaaaactcgtattgaaaaac
taa
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