Heyndrickxia oleronia: I5818_24250
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Entry
I5818_24250 CDS
T07202
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bou
Heyndrickxia oleronia
Pathway
bou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I5818_24250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bou03019
]
I5818_24250
03009 Ribosome biogenesis [BR:
bou03009
]
I5818_24250
Enzymes [BR:
bou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I5818_24250
Messenger RNA biogenesis [BR:
bou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I5818_24250
Ribosome biogenesis [BR:
bou03009
]
Prokaryotic type
rRNA helicases
I5818_24250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QQZ04699
LinkDB
All DBs
Position
complement(4830899..4832362)
Genome browser
AA seq
487 aa
AA seq
DB search
MTNFSELNLSPSILKSLKRMGFEEASPIQAKTIPLSTQGKDIIGQAQTGTGKTAAFGIPL
IEKIDTKNQNVQSIIIAPTRELAIQVSEELYKIGYDARARVLAVYGGQDIQRQIKALKKG
PQIIVGTPGRILDHIKRRTLKLDQVTTLVLDEADEMLNMGFIDDIESILSSVPEERQTLL
FSATMPDPIRRIAERFMNDPELVRVKAKEMTVPLIEQYYVKVQEREKFDVLSRLIDVQSP
ELAIVFGRTKRRVDELANALNLRGYMAEGIHGDLSQAKRLSVLRKFKDGKVDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVNPREMSYLKIVEQTTK
KRMMPMRPPSWDEALEGQIRVSMEKLSDIVKEGNLNDYLSVAKELLEENDATQIIAASLK
LMTKEPDKTPVHITEERPLPMKKDGHRSSSRRGKPSFSGNKGGHGGSGRKPRRSGRRDYQ
HNKDQRS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaatttttcagagttaaatttaagcccctcaattttaaaatcattaaaaagaatg
ggctttgaagaagcatcaccaattcaagcaaaaacaatcccattaagtacccaaggaaag
gatattattgggcaagcgcagactggtactggtaaaacagctgcttttgggattccgctt
attgaaaaaattgatacaaaaaaccaaaatgttcaaagtattattattgcccctacccgt
gaattagctatccaagtatcagaagaattatataaaattggttacgatgcaagagcgcgt
gtattagctgtttatggcgggcaagatattcaacgtcaaattaaagcgttgaaaaaaggc
ccacaaattattgtcggtactccagggcggattcttgatcacatcaagcgccgcacatta
aaacttgaccaagtaactactttagtacttgatgaagcagatgaaatgttaaatatggga
ttcattgatgatattgaaagcattttatctagtgtgccggaggaaagacaaacattactt
ttctcagcaactatgcctgatcctattcgaagaattgctgaaagatttatgaatgatccg
gaattagtccgtgtgaaagcaaaagaaatgacggttcctttaattgaacaatattatgta
aaagtgcaggaaagagaaaaattcgatgtgctttcacgtttaattgatgttcaatcacca
gaacttgcaattgtatttggtcgtacaaagcgtcgtgttgatgaactggcaaatgcccta
aacttaagaggatatatggcagaaggaattcatggcgacttaagtcaagcaaagcgctta
tccgtattaagaaaatttaaagatggaaaagtggatgttcttgttgcgacagatgttgct
gctcgtggattagatatttcaggtgttacacatgtatataattatgatattccacaagat
cctgaaagctatgttcaccgtattggaagaactggccgtgcaggtaaagaaggaatggct
attacatttgtaaatcctcgtgaaatgagctatttaaaaattgttgagcaaacaacgaaa
aaaagaatgatgcctatgcgtccgccaagttgggatgaagcattagaaggtcaaattcgc
gtttcaatggaaaaactttctgatatagtaaaagaaggaaatctaaacgattatctttca
gtagcaaaggaattactagaggaaaatgatgcgacccaaattattgctgcatcacttaaa
ttaatgactaaagaaccggataaaacacctgttcatattacagaagaacgccctctacca
atgaaaaaagatgggcatagatcttcttcaagacgtggtaaaccttcctttagcgggaat
aaaggtggtcacggaggaagtggcagaaagccgagaagatcaggaagaagagattatcaa
cataataaagatcaaagatcttaa
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