Brucella ovis: BOV_A0544
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Entry
BOV_A0544 CDS
T00534
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bov
Brucella ovis
Pathway
bov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BOV_A0544 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bov03400
]
BOV_A0544 (mfd)
Enzymes [BR:
bov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BOV_A0544 (mfd)
DNA repair and recombination proteins [BR:
bov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BOV_A0544 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
ABQ62010
UniProt:
A0A0H3ASC6
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All DBs
Position
II:complement(559169..562567)
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AA seq
1132 aa
AA seq
DB search
MEEIGERGPIMYIVRDGQRIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARR
LAALSALCALKKAPHPAVILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLER
NGFERVSTVRDIGEYAVRGGILDLYAQGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRK
EFVLQPMSEITLSSDMISRFRKNYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDN
LETVFDHAGSMPVVFDHLVHEALTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEM
LYLTPGQVEEAAEAAGLRIDLTPFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAV
VKHIADLRASGKKVLVAAWTEGSLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAV
LAVESGFDTGDLVVVAEQDILGDRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGR
FIGLKTITAAGAPHDCLEIHYAGDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQAR
KAKLKKRLLEIAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPDDETDDQLTAIEAVA
DDLAQGKPMDRLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRF
HGLPINVAHASRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQH
FGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPF
DPLVIRETLLRERYRGGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDI
MNAFYDGQYDVLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFAL
FTLPAGKMLTQMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFE
LYQQMLEEAVATLKGSGEVEDSQWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEP
QDIDAFGAELIDHFGPMPDEVQHLLKIVYIKALCRRANVEKLDAEPKGVVIQFRHATFNN
PVGLVKMIGEQGSMAKIRPDQSIVFIRDWPTPEKRLNGSAVIMTQLAKIAAA
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
gtggaagagatcggggagcgcgggccgatcatgtatatcgtgcgcgacgggcagcgcatt
gccgatctggagcaggtgttgggtttcgtttcgcccgatctgccggtgctgcacctgccc
gcctgggattgcctgccttatgaccgcgtgtcgccaggggcggatgctgcagcgcgcaga
cttgcggcgctcagcgcgctttgcgcactgaagaaagcaccgcatccagccgtcattctc
accacggccaatgccgtgctgcaaaaattgccgccgcaggccgcacttggcgaacaggtg
atctcagcgcgccccggcaaccagctcgacatgaacgatcttgccgcacggctggagcgc
aacggctttgagcgtgtctctaccgtgcgcgacatcggcgaatatgcggtacgcggcggc
attctcgatctttatgcgcagggagcggaagaaccgctgcggcttgattttttcggcgat
acgctggaaacgatccgtgccttcgatcccgcctcccagcgcaccaccggcacccgaaag
gaattcgtgcttcagccgatgagcgaaattacgctctcgtccgacatgataagccggttt
cgcaagaattatgtggccatgttcggcgcgccgcagcgtgacgatgcgctttatcaggcc
atcagcgaaggccgccgttttgctggcatggaacattggctgccgcttttctatgacaat
ctggagacagttttcgaccatgccgggtcaatgccggtcgtgttcgaccatctggtgcat
gaggcgctgaccgagcgccacaccatggttgtggaccattacgaagcgcgactgcggcag
gcggagggcaaagaggcgggcagcgatgccgtgccttacaagccggtaaagccggaaatg
ctctatcttacgccgggccaggttgaagaagccgccgaggccgctggcctgcgtattgac
cttacgccattcggcgcgccggaggtttccggccggaccattattcatgccgatgtgcac
aagggccgcagctttgccgaggagcgcgccgcaaccgacgtgaacctgtttgaagccgtg
gtgaaacatattgcagacctgcgcgcctccggcaaaaaggttctggttgccgcctggacc
gaaggttcgctcgaccggctctgtcaggttctggacgaacacgggcttgaaaaaatagag
accgtcgataggctttccaccgtcaaggccctgtcgcgcgacaaggtgacggcggcggtg
ctggcggtcgaaagcggcttcgatacgggcgatctggtggtcgtggcggagcaggatatt
ctgggcgacaggctcatccgccgctccaggcgccgcaagcgcgatcaggatttcatctcg
gaagtcgcctcgctgacggctggcgatatcgtcgtccatgtcgatcacggcattgggcgc
tttatcggcctcaagacgattactgcggcaggcgccccgcatgactgccttgaaatccat
tatgcgggcgatgaccgcctgtttctgccggttgagaatatcgagcttctgtcgcgctat
ggctcggaagggtccgatgcggttctcgacaagctgggcggtggcgcatggcaggcgcgc
aaggcaaaactcaagaaacggcttctggaaattgccggccatctgatccagattgccgcc
gaacgccagatgcgcggtgcgcctgtgatgacgccgccggacggtctttatgcggaattt
gccgcgcgctttcccgatgatgagactgacgaccagttgacggcaatcgaggccgtggcg
gatgatcttgcgcaaggcaagccgatggatcgcctcatctgcggcgatgtcgggttcggc
aagacggaagtggcgctgcgcgccgccttcatcgccgcgatgagcggcgttcaggtggca
gtggtcgtgccgaccacgcttctttcgcgccagcatttcaagaccttctccaaccgcttt
cacggcctgccgatcaatgtggcccacgcctcacgcctcgtcggcgcgaaggagctggcc
gccaccaaaaaggggctggaagagggaacggtcgatattgtcgtcggcacacacgcgctt
ttgggcagctccatcaagttcaagaatctcggccttctcattatcgatgaggagcagcat
ttcggtgtgaagcacaaggaacggctgaaggaactgaaatccgacgtccatgtgctgacc
ctttcggccacgccgatcccgcgcaccctgcaacttgcgctgaccggcgtgcgtgaactt
tcgctcatcaccacgccgccggtggaccgcatggcggtgcgcaccttcgtctcgccattc
gatccgctcgtgatccgcgaaacccttttgcgtgaacgctatcgcggcggccagagcttc
tatgtcgtcccacgcatagccgacctcacggatattgaagaattcctgaaggagcatgtg
ccggaactgaaagtggccgtggcccatggccagatggcgccgggtgtgctggatgacatc
atgaatgccttctatgacgggcagtatgatgtgcttctttccacaaccatcgtggaatcg
ggcctcgatattccaaccgccaacaccatgatcgtgcatcgtgccgatatgttcgggctg
gcgcaactctatcagttgcgcggccgcgtgggccgctccaagcagcgcgctttcgcgctg
ttcacgctcccggcgggcaagatgctgacgcagatggccgaacgccgtctgaaagtgctg
caatcgctcgacacgcttggcgcgggcttccagcttgcaagccacgacatggatattcgc
ggcgcaggcaatctgctgggcgaggaacagtcgggccacatcaaggaagtgggcttcgag
ctttaccagcaaatgcttgaagaagcggttgcgacgctgaagggctccggcgaagtggaa
gacagccagtggtcgccgcagatcgccattggtacggcggtcatgatcccggaagcctat
gtgcccgacctgcaattgcgccttggcctttatcgccgtctggccgatctggaagagccg
caggatatcgatgcctttggtgcggaactcatcgaccatttcggcccgatgcccgacgaa
gtgcagcatcttctcaagatcgtctatatcaaggcgctctgccgccgcgccaatgttgag
aaactcgatgccgagccgaagggcgtggttatccagttccgccacgcgaccttcaacaat
ccggtcggtctggtaaaaatgatcggcgagcaggggtccatggcgaagatcaggccggac
cagagcatcgtcttcatccgcgattggccgacaccggaaaagcgcctcaacggctccgcc
gtcatcatgacacagcttgcaaagattgcggcggcctga
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