Bosea sp. NBC_00550: NWE53_10475
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Entry
NWE53_10475 CDS
T09927
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bow
Bosea sp. NBC_00550
Pathway
bow02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bow00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NWE53_10475 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bow03021
]
NWE53_10475 (rpoD)
Transcription machinery [BR:
bow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NWE53_10475 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
LPD39
Motif
Other DBs
NCBI-ProteinID:
UZF94561
LinkDB
All DBs
Position
complement(2195907..2197922)
Genome browser
AA seq
671 aa
AA seq
DB search
MATKASEREKTDQVAPDAPPTTDGPLLDLTDQAVRRMIKLAKKRGYVTYDELNEVLPSEE
FSSEQIEDVLGQLSEQGINVVDNEDPEAAGEERANRKEAAGSDDDEVEGGDLVEASRQTL
PTETKRNLEPTERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLT
FQAIIIWRDELVDGKILLRDIIDLEATYAGPDGKNPDAIPGEEGAEEAEQAETPEGETPP
EMDDDDLENNVSLSAMEAELKPRVLETFNAIADDYKKLRRLQDQDIANRLENTKLSPSQD
RKYKKLKDDIITAVKSLSLNNNRIEALVEQLYDINKRLIGHETRLLRLAESYGVGREDFL
KQHVGGELDPKWVLRVSKLGSRGWKEFVGSELERIKQLREEVHTLASETGLEIQEFRKIV
LMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEE
LAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRE
TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS
RSRKLRSFLDN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaagcgagcgaacgggaaaagaccgatcaggtcgcgccggatgcccccccg
actaccgacggcccgttgctcgatcttaccgatcaggccgtacggcggatgatcaagctc
gcgaagaagcgcggctatgtcacctatgatgaactgaacgaggttctgccctcggaggag
ttctcctcggagcagatcgaggacgtgctcggccagctcagcgagcagggcatcaacgtc
gtcgacaacgaggacccggaagcggccggcgaggagcgcgccaaccgcaaggaggccgcc
ggcagcgacgacgacgaggtcgagggcggtgatctcgtcgaggcctcgcggcagacgctg
ccgaccgagaccaagcgcaacctcgagccgaccgagcgcaccgacgatccggtgcggatg
tatctgcgcgagatgggctccgtcgagctgctctcccgcgagggcgaaatcgccatcgcc
aagcgcatcgaggccggccgcgaggcgatgatcgccgggctctgcgagagcccgctgacc
ttccaggctatcatcatctggcgcgacgagctcgtcgacggcaagatcctgctgcgggac
atcatcgatctcgaggcgacctatgccggcccggacgggaagaaccccgacgcgatcccg
ggagaggaaggcgccgaggaagccgagcaggccgagaccccggagggcgagaccccgccg
gagatggacgatgacgacctcgagaacaacgtgtcgctctcggccatggaggccgagctc
aagccgcgcgtgctcgagaccttcaacgccatcgccgacgactacaagaagctgcgccgc
ctgcaggaccaggacatcgccaaccggctggagaacaccaagctctcgccgtcgcaggac
cgcaaatacaagaagctcaaggacgacatcatcaccgcggtgaagtcgctctcgctcaac
aacaaccgcatcgaggcgctggtcgagcagctctacgacatcaacaagcgcctgatcggc
cacgagacgcgcctgctgcgcctcgccgagagctatggcgtcggccgcgaggacttcctc
aagcagcatgtcggcggcgagctcgatccgaaatgggtgcttcgcgtctccaagctgggt
tcgcgcggctggaaggaattcgtcgggtcggagctcgagcgcatcaagcagctgcgcgag
gaggtgcacacgctcgcctccgagaccgggctggagatccaggaattccgcaagatcgtg
ctgatggtccagaagggcgagcgcgaggcaaggcaggcgaagaaggaaatgatcgaggcc
aatctgcgcctcgtgatctcgatcgctaagaagtacacgaaccgcggcctgcagttcctc
gacctgatccaggaaggcaatatcggcctgatgaaggcggtcgacaagttcgagtaccgc
cgcggctacaagttctcgacctatgcgacatggtggatccggcaggcgatcacccgctcg
atcgccgaccaggcccgcacgatccgcatccccgtccacatgatcgagacgatcaacaag
atcgtgcggacctcgcgccagatgctgcacgagatcggccgcgagccgaccccggaggaa
ctggccgagaagctggccatgccgctggagaaggtgcgcaaggtcctgaagatcgccaag
gagccgatctctctggaaacgccgatcggcgacgaggaggattcgcatctcggcgacttc
atcgaggacaagaacgcgatcttgccgatcgacgcggcgatccagagcaacctgcgcgag
acgacgacgcgcgtgctggcctcgctcacgccgcgcgaggagcgcgtgctgcgcatgcgc
ttcggcatcggcatgaacaccgaccacaccctcgaagaggtcggccagcagttcagcgtc
acccgcgagcgcatccgccagatcgaggcgaaggcgctcaggaagctgaagcatccgagc
cggagccggaagctgcggagcttcctggacaactga
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