Bosea sp. NBC_00550: NWE53_19115
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Entry
NWE53_19115 CDS
T09927
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bow
Bosea sp. NBC_00550
Pathway
bow03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NWE53_19115 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bow03400
]
NWE53_19115 (ligD)
Enzymes [BR:
bow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NWE53_19115 (ligD)
DNA repair and recombination proteins [BR:
bow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NWE53_19115 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UZF91223
LinkDB
All DBs
Position
3967885..3970344
Genome browser
AA seq
819 aa
AA seq
DB search
MSTLDLYRSKRDFTRTRAPKGTGKGKKGAAAQGGAFVVQKHAARRLHYDFRLEHAGVLWS
WAVTRGPSLDPDEKRLAVHVEDHPLEYGGFEGTIPAGQYGGGSVIVWDEGRWLPEGDPAA
GMKKGHLVFTLEGHKLHGRWHLVRLKPRRGEKRDNWLLIKSEDEFARTDEDILETQPDSV
KSGLSVEAIGSDAEKGGVWDTTKPAKRAAAAAKPAQKARRKSDDGELPPFIDPCLATLQE
KPPPGENWLHEVKFDGYRLQARIDHGAVKLLTRSGLDWTSRFGKSLVAALAALPCDEALI
DGELVALAESGISSFSALQEALSEGRSAGLVYFAFDLLHLDGEDLRSEPLLARKERLEHL
LQHGAPAESLVRYSEHFVEPGQTMLNHACRMGLEGVISKRADAPYRSGRGRDWIKSKCTQ
RQEFVIAGYVPSQASPRKLGSIVTGYHEDGELKPAGRVGTGFTVKSAAALKAKLDAIASD
ASPFSGAAARERGVVWVKPELVAEVEFRAWTASKTLRHASFMGLREDKPAGEIVAELPVK
PALEKAKKATLGSEKAPPVKTTVKLSNPDKPLWPDIGFTKQDLLAYYAKVWPLMQRFVVG
RPLSLVRAPNGIEGHRFFQKHAGPGMHEAVKRRKDKDGEELIYIEDFDGLAALVQLGTVE
IHVWGAAMEAVETPDQVIFDLDPDTGVPLERVRDAAMTIRRHLEELGYESFLKVSGGKGF
HVVLPLKPKAGWDRVKDFARDFAKAMEHAEPKLYTATLSKKARRGRIFIDYLRNGRGATA
IAPYSTRARPAATVAMPVPWEEIGALKPDAFTAPDINPR
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgctcgatctctaccgctccaaacgcgatttcacgcgcacgcgcgcgcccaaa
ggcaccggcaagggaaagaagggggcagctgcgcagggcggtgccttcgtcgtccagaag
cacgcagcccggcgcctccattacgatttcaggctcgaacatgccggcgtcctctggtcc
tgggcggtgacgcggggcccgagtctcgacccggacgagaagcggcttgccgtccatgtc
gaggaccacccgctggagtacggcggcttcgaaggcacgattccggccggccaatatggc
ggcggatcggtgatcgtgtgggacgagggccgctggttgccggagggcgacccggcggcg
ggcatgaagaaggggcacctcgtcttcacgctggaaggccataagctccatggccgctgg
catctcgtgcggctgaagccccggcgtggagagaagcgggacaactggctgctgatcaaa
tccgaggacgagtttgccaggaccgacgaggatattctcgaaacgcagccggattcagtg
aagtccggcctttcggtcgaagccatcggcagcgatgcggaaaagggcggcgtctgggat
acgacaaagcctgcgaaacgcgccgcagcagcagcgaaaccggcccaaaaggcgcgtcgg
aaaagcgatgacggcgaactgccgcccttcatcgatccctgtctcgcgacgctgcaagaa
aaaccgccccccggcgagaattggctgcatgaggtcaagttcgacggctatcgcttgcag
gcgcgtatcgaccatggcgcggtgaaactgctaacgcggtccggtctcgactggacctcg
cgcttcggcaaaagccttgtcgcggcgctggcggccctgccctgcgatgaggcgctgatc
gatggcgaattggtagcgctcgccgaaagcggcatttcttctttctcggccctgcaggag
gcgttgtccgaaggccgtagcgccggccttgtatatttcgccttcgatctgctccatctc
gacggtgaagatctgcgcagcgagccgcttctggcccgcaaggagcggttagagcatctg
ctgcagcacggtgcccccgctgaaagtttggtgcgctacagcgagcatttcgtcgaaccg
ggacagaccatgctgaaccatgcctgccgcatggggctcgagggtgtcatatcgaagcgt
gcggacgcaccctatcgcagcgggcgcggtcgcgactggatcaagtcgaaatgcacccag
cgccaggagttcgtgatcgccggctatgtcccgtcccaggcttcgccgcgcaagctcggc
tcgatcgtcacgggctaccatgaggatggcgaactgaagcccgcgggccgcgtcggcacc
ggctttaccgtaaaatcggccgcagcgctgaaggcgaagctcgatgcgatcgcgagcgat
gcgtcgcccttctcgggcgccgccgcgcgggagcgaggtgtcgtctgggtgaagccggaa
ttggttgcggaagtcgaatttcgggcctggaccgcctcgaagaccctgcggcacgcttca
ttcatgggattgcgcgaggataagccggctggcgagatcgtcgccgaattgccggttaaa
ccggccctggagaaggccaaaaaggcgacattgggttctgaaaaggcgccgcctgtgaag
acgacggtgaagctgtcgaaccccgacaagccgctctggccggatatcggcttcaccaag
caggatctgctcgcctattacgccaaggtctggccgctgatgcagcgcttcgtcgtcggc
cggcccttgagcctggtgcgggcgccgaatggcatcgagggccaccgcttcttccagaag
catgccggcccggggatgcacgaggccgtcaagcgccggaaggacaaggatggcgaggag
ctgatctatatcgaggatttcgacgggctcgctgcgctcgtccagctcggaacggtcgaa
atccatgtctggggcgcggcgatggaagccgtcgaaacgcccgatcaggtcatcttcgat
ctcgatcccgatacgggcgtgccgctcgaacgggtgcgcgacgcggcaatgacgatcagg
cgccatctcgaggaactcggctacgagagcttcctcaaggtttccggcggcaagggcttc
catgtcgtgctgccgctgaagccgaaggccggctgggatcgcgtcaaggatttcgcccgc
gacttcgccaaggcgatggagcacgccgaaccgaagctctacaccgcgacgctctcgaag
aaggcgcggcgtggccgcatcttcatcgattatctgcgcaatgggcgcggcgcgactgcg
atcgccccttattccactcgcgcaaggccggccgcaacggttgcgatgcccgtgccctgg
gaggagatcggcgccctgaagcccgacgccttcacggcgccggatatcaatccgcggtga
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