Brasilonema octagenarum: DP113_03395
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Entry
DP113_03395 CDS
T10103
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
box Brasilonema octagenarum
Brite
Enzymes [BR:
box01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DP113_03395
Transfer RNA biogenesis [BR:
box03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DP113_03395
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NCBI-ProteinID:
QDL13452
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Position
798860..800926
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AA seq
688 aa
AA seq
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MEKGTLVEFRLGSDRRLGVVDRPDGKTRLFVVDERGQSHSLAPRQITYAVTGETYKPSQI
SGFLEEVKPYLDPSSLEVAWELLVEGGETVTPCEMANLLFSESQAPYCYAAYLLLSDDKI
YFKQKGDAYEPRSAAQVAERKHQLEIEALKAKGQQEFLARVEQALKGEPVEWQRYDRHRL
EAIEKYAALVADIVRVGLNYDSLARAYPPPALVLETMNMLGRPATPQGAFQLLVDLGCWS
PYENLFLRRSSIPVQFASKVLEVSQQRLESHPPDRDVNRLDLTHLKVYTIDDESTTEIDD
GLSWELLGDGRERLWVHIADPTRWLIPEDELDLDARKRGSTVYLPTGMVPMFPEILATGP
MSLVQGKICYALSFGIILDDSGAVEDYTIHPSFIKPTYRLTYEDVDEVLDLGVQAESEIA
AIANWARRRKTWRYSQGAISINMPEAMIKVKGDNISIDILQDSTSRQLVAEMMIVAGEVA
ARYGQKYNIPLPFRGQPQPELPPEQELLQLPAGFVRACAMRRCMPKSEMSITPVRHSGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEVLPFSAEQLKQVMMTVSSITQEVTMVERQT
NRYWALEYLRRQPDEIWETTVLMWLREDSGLALILLEDLGLQLPMLFKRSVNLGEQMLVK
VLHADPLRDVIQFQEIIYQEAQPTANSM
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttcgacttggtagcgatcgccgtttgggtgtagta
gaccgcccagacggcaaaactcgtttgtttgtagtagatgaacgtggtcaatcccacagt
ctcgcacctcggcaaataacttacgcagtgactggggaaacgtacaaaccttcacaaatc
tccggattcttagaggaagttaagccttatttagacccctccagtctagaagtagcttgg
gaattactcgtagaaggtggggaaacagtaacgccttgtgagatggcaaatttactgttt
tctgaatcacaagcaccttattgctacgctgcgtatcttttattatcagatgataaaatt
tacttcaaacagaagggagacgcttacgagccgcgaagtgcagctcaagtcgcagaacgc
aaacaccaactagaaatagaggcactcaaagctaaaggacagcaggaatttctggctaga
gtagaacaggcgctcaaaggtgaaccagtagaatggcaacgctatgatcgccaccgccta
gaagccatagaaaaatatgcagcgttagttgctgatatagtacgtgtcgggttaaactat
gactccctagctcgtgcttatcctcccccagcattggttttggaaacgatgaatatgctg
ggacgtcccgcaaccccccaaggagcatttcaactgttagtggatttgggttgttggagt
ccttatgaaaacttatttttacgtcgttcgtcaattccggtacagttcgctagcaaggta
ttagaagtgtcgcaacagcgattggaatcacatccaccagacagagacgtcaaccgcctg
gatttgactcatcttaaggtgtacacaatcgatgacgaaagtacaaccgagatagatgat
ggtctaagttgggaattgcttggcgatggcagagaacggttgtgggtgcatattgctgat
ccgacacgctggttgataccagaagatgagttagatttagacgcaagaaagcgaggcagt
acagtatatttgccgacaggcatggttcctatgttccctgaaattctggcaacaggacca
atgagcttggtgcagggaaaaatctgttatgccttgagttttggaattattttagatgac
agcggggcagtagaagattacaccatccatccaagtttcattaaaccaacctatcgcctg
acttacgaagatgttgacgaagtgttggatttgggcgtgcaggcagaatcagaaattgcg
gcgatcgccaattgggcacgacgacgtaaaacttggcggtattctcaaggagcaatcagc
atcaacatgcccgaggcaatgattaaagtcaaaggcgacaatatcagcatcgatatatta
caagactccacatcacggcaattggtcgctgagatgatgattgttgctggcgaagttgct
gctcgttacggtcaaaagtataacatacccctgccctttcgcggtcaaccacagccggag
ttacctccggagcaagaactgctacaactgccagcaggatttgtccgggcttgcgcgatg
cgtcgttgtatgcctaagagcgaaatgagcataacccccgtgcgtcattctggtttaggt
ttagacacttacacccaagccacttctcccatccgtcggtatagtgatttgctgactcac
tttcaactgaaagcacacctacgtggtgaagtgttgcccttttcagcggaacagttaaaa
caagtcatgatgaccgtatcttcaatcacccaagaggtgacaatggtagaacggcaaacg
aatagatattgggctttagaatatttgcgccgtcagcctgatgaaatttgggaaacaaca
gtgctgatgtggttgagagaagatagtggcttagccctgattttgttagaagatttaggc
ttgcagttgccaatgttatttaaacgttctgtgaatttgggcgaacagatgttagtgaaa
gtccttcatgctgatccacttagagacgtgattcagtttcaggaaattatttatcaagaa
gcccaacctacggcgaattctatgtaa
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