Brasilonema octagenarum: DP113_04045
Help
Entry
DP113_04045 CDS
T10103
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
box Brasilonema octagenarum
Brite
KEGG Orthology (KO) [BR:
box00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
box03032
]
DP113_04045 (topA)
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_04045 (topA)
Enzymes [BR:
box01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DP113_04045 (topA)
DNA replication proteins [BR:
box03032
]
Prokaryotic type
DNA Topoisomerases
DP113_04045 (topA)
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DP113_04045 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
DUF6429
Motif
Other DBs
NCBI-ProteinID:
QDL13562
LinkDB
All DBs
Position
complement(946837..949500)
Genome browser
AA seq
887 aa
AA seq
DB search
MSTLVIVESPTKARTIRNYLPRDYRVEASMGHVRDLPQSATEIPANVKGEKWAQLGVNVD
ADFEPLYVVPKDKKKVVTQLKDALKDVDELILATDEDREGESISWHLYQLLKPKVPTKRM
VFHEITSDAIKKALKNCRNIDEQLVRAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQ
SVAVRLLVNRERQRRAFRQGSYWDLKATLNPPDSPKAQSFTSQLVTLGGTRLANGGDFDA
ATGKIPSDRNVILLNQEQAQALKERLTGKTWKVTDLEERPVTRKPAPPFTTSTLQQESNR
KLRLSARDTMRVAQNLYEQGYITYMRTDSVHLSDQAIAAARDSVDKLYGKDYLSPQPRQY
TTKSKGAQEAHEAIRPAGSTFRTPQETGLSGREYQVYDLIWKRTVASQMADSRQTQIIMQ
LLVEDAGFRSSGKRIDFPGFLRAYVEGSDDPEAALEDQEVILPNLKVGDSPKCTDLEAVG
HETQPPARYTEATLVKTLESEGIGRPSTYASIIGTIIDKGYAQLVSNALVPTFTAFAVTE
LLEKYFPDVVDPSFTSKMEQTLDDISTGEAQWLPYLKEFYLGDKGLETLVKEQESQIDAN
VARTVELENLDAKVRIGKYGAYIEKENGDGVVTASIPKDLTPADLDPEKVETLLRQKIVG
PDELGIHPETGETIYVKIGPYGPYVQLGDKTEENSKPKQASLPKGITSENVTLETAIGLL
SLPRTLGVHPQTGAQIQANLGRFGPYVVHNQTGEKDYRSLKASDDILTISLGRALELLSE
PKKGRSTRNSKSKAAERELGAHPEDGEPVNIYNGPYGPYIKHGKTNVSIPEGISVSDVTL
ASALEWLASKASTAKSTRKTTTKSSSSSSKSRTKSSTTTAKKTKKAS
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactcttgtcatcgtcgaatctccgaccaaagctcgtaccattcgcaactacctg
ccaagagactaccgggtggaagcgtctatgggtcatgtacgtgaccttcctcaatcagca
actgaaattcccgccaatgtcaagggggagaaatgggcacaactcggggtaaatgtagac
gccgactttgaaccgctgtatgtcgtccctaaagataaaaagaaagttgtcactcagctc
aaagacgcccttaaagatgtagatgaactgattctggcaacggatgaagaccgggaaggt
gaaagcatcagttggcatttataccagttgctcaagccaaaagttcctacaaagcggatg
gtgtttcacgaaattacctctgacgccatcaagaaagccttgaaaaactgccgcaatatt
gacgaacagctagttcgtgctcaagaaacgcggcggattttggatagacttgtgggctat
accctgtctcccctgctgtggaaaaaaatcgcttggggactatctgctggacgtgtacag
tctgttgctgtgcggctgttggtcaaccgggaacgtcaacgccgtgctttccgccaaggt
tcttactgggacttgaaagcaacgttaaatccccctgattctcccaaagcacaatcattt
acttcccaactggtaacactgggaggaacaaggctggcgaatggcggtgattttgatgcc
gccacagggaaaatcccctcagatcgcaatgttatcttgctcaatcaagagcaagcacaa
gccctgaaagaacgtctaacaggaaaaacttggaaagtcacagaccttgaggaacgtcct
gttacgcgtaaacccgcgccaccttttaccacctcgactctacagcaggaatctaaccgc
aaactgcgccttagcgcacgggacacaatgcgagttgcccagaatttgtacgaacaagga
tatattacctatatgcgtacagattcggtgcatttgtcggatcaggcgatcgccgccgcc
cgtgacagtgtagacaaactttacggcaaagattacctcagtcctcaaccgaggcaatac
accaccaaatccaaaggcgcacaagaagcccacgaggcaattcgccccgcaggtagtacc
ttccgcactccccaagaaacaggcttaagcggtcgggagtaccaagtgtacgacctgatt
tggaagcgtaccgtcgccagccaaatggcagactctcgccaaactcaaattatcatgcaa
ctgctcgtggaagatgctggttttcgctcttctggcaaacgcatcgactttccgggattc
ttgcgcgcttatgtggaaggttctgacgatccagaggcggcgctggaagaccaagaagtc
atcttgcctaatctcaaagtgggggatagtcccaaatgcactgatttagaagcagttggt
cacgaaacccaacctccagcaagatacaccgaagcaaccttagtgaaaactctcgaaagc
gaaggcattgggcgtcccagcacctacgctagcatcattggcaccattattgataaaggt
tatgcccaattggtgagtaatgctctggtacccacctttactgcttttgccgtcacagaa
ctgttggaaaaatattttcctgatgttgttgatcccagctttacctctaagatggagcaa
accctggatgacatttccacaggtgaagctcagtggttaccctacctcaaggaattctat
ttgggagacaaaggtttagaaaccttggtaaaggaacaggaaagccaaatagatgccaat
gttgcccggacagtggaactagaaaacctagatgccaaagtccgcattggtaagtatggt
gcttatatagaaaaagagaatggtgatggtgttgtcaccgcttccattcccaaagacctg
actcctgctgatcttgaccccgaaaaggtagaaacactgctgcggcaaaaaattgtcggc
ccagacgaactaggtattcatccagaaacgggtgaaacaatttacgtcaaaatcggtcct
tacggtccctacgtacaattaggagataaaacagaggaaaactcaaaacccaaacaagct
tccttacccaaaggaataacgtcagaaaatgtcacccttgagacagctattggtcttttg
tcactaccgcgaacactgggggttcatccacaaacaggcgctcaaatccaagccaattta
ggacgctttggaccttacgttgttcataatcaaactggtgaaaaagattaccgttccctg
aaagctagtgatgacatattgacaatttccttagggcgtgcattggaactgttgtctgaa
ccgaaaaaaggacgcagcaccagaaacagtaagtcaaaggcggctgaacgggaattaggt
gctcacccagaagatggtgaaccagttaatatctacaatggcccctacgggccttacatt
aagcacggcaaaactaatgtgagcattccagaaggtatatccgtaagcgatgtgactctt
gcttcagccctggagtggttagcatccaaagcatcaacagcaaaatcgactcggaaaact
acaacgaaatcaagcagttctagctctaaatcaaggactaaatcgtcaactaccaccgca
aaaaaaacaaaaaaggctagttaa
DBGET
integrated database retrieval system
