Brasilonema octagenarum: DP113_04440
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Entry
DP113_04440 CDS
T10103
Name
(GenBank) iron ABC transporter substrate-binding protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
box Brasilonema octagenarum
Pathway
box03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP113_04440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
box03019
]
DP113_04440
03016 Transfer RNA biogenesis [BR:
box03016
]
DP113_04440
Enzymes [BR:
box01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DP113_04440
Messenger RNA biogenesis [BR:
box03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DP113_04440
Transfer RNA biogenesis [BR:
box03016
]
Prokaryotic type
tRNA degradation factors
DP113_04440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QDL13625
LinkDB
All DBs
Position
1036347..1038707
Genome browser
AA seq
786 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKLLEKKLGCEDEVSLQKLHIALEILEKIGVLIKERGKYRR
VTEEGLIEAKLRCSSKGFCFAIQDVEGSEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVESGFRAVPLDDRLLFELKLQLNSAKLEQAIDHLAHVE
VLRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPESVQEAASKLPKKLLKA
DLKNRLDLRPLLTLSIIGNSNDSTMVENAFTLEKTSEEHWQLGFHIADLSHFIQPDEALD
REALKRGRSVYLGELVLSMLPEGVAERCALVPKTDRLAISFLITIDSKSGQVGEWEVQPS
VVKVDASLSEEQVEAILTNESTKVSSSFVEMVQQLDSLRYLLKEVRSNRGCLQLNLPPNQ
NPYYDEGAMGCVMVNDLPVHSLLTEFVLLVNQLIATHFNALGIPAIWRVQSAPDAEDVQE
MLKLAINLGVELSLDPETDVQPLDYQQLTRVFADSASEQVLTYLLQDTLKPATYSTTKGP
HFGLSLPEYVHFTSPLRRYPDLLMQRVFYTLLEHGRDRRTTRVKERVNLRHSNSHGEINW
NVLPPELQQELQSDLTRVIIQLNDREKEVQEAEADLAGLQRASLMKQRISEVFTGVITGV
QSYGFFVEIEVPPTVSNSVSNPRVPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVAVQVKSVDYYRQQIDLVTVGSDGMPVFGKDVSFSNGEDTNLYLSHETIEPDELD
LYPEEE
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacacttctcgccaatttcactgatgataaattggtggctcgt
aaactcttggaaaagaaacttggttgtgaagatgaagttagtttacaaaaacttcatatt
gctttagagatactggaaaaaatcggggttttaatcaaagaacgtggcaaatatcgtcga
gtcacagaagaagggctgattgaagcaaaactccgttgttccagtaaaggcttttgcttt
gcaattcaagacgtggaaggttccgaagatatttacatccgcgaaagtcatctcagtaac
gcctggaatggcgatcgcgttttggttagagttctcaaagaaggtagtcgtcgtcgctcc
ccagaaggagaggttaagttaatcttagaacgctccaatcacactttactagcgcggatt
aagcaagtagaaagtggatttcgtgctgtacctttggatgatagattactgtttgaactc
aaactgcaactaaacagcgctaagttggaacaagcaattgaccacctagctcatgtggaa
gttctacgttacccactagcacaatatcctccacttggtcgggtagtacaaattcttggc
agtgatgctgaagcggcggcggacatcgatttagtcacctgtaagcatgatctttctcgt
acttttccagaatccgtacaggaagcagcctcaaaattacccaaaaagctgctaaaagct
gatttaaagaatcgcctcgatttgcgacctctgttaacattgagtattattggcaacagt
aatgactcaacgatggtcgaaaatgctttcaccttggaaaaaacaagcgaagaacattgg
cagttgggctttcatattgcagatctttctcattttattcaaccagacgaagccctagac
cgagaagcactaaagcgcggtcgctcagtttatctgggagaactggtactgtcaatgttg
ccagaaggtgttgctgaacgctgtgctttagtacctaaaaccgatcgcttagcgatttca
ttcttaataacaattgattcaaaatcaggacaagttggagaatgggaagtacaacccagc
gttgtcaaagtagacgcctcactgagtgaagaacaagtagaagcaattctcacaaacgag
tcaaccaaagtctcatcctcctttgtagagatggtgcaacaactcgatagtttgcgctac
ttgttaaaagaggtacgatcgaaccgtgggtgcttgcagttaaatttgccaccaaaccaa
aacccatactatgatgaaggcgctatggggtgtgtgatggtgaatgacttacctgtgcac
tccttgttaactgagtttgtgctactggttaaccaacttatagcaacccactttaatgct
ttgggtatcccagctatttggcgagttcaaagcgcacctgatgccgaagatgtgcaagaa
atgctgaaattagcaattaacttgggcgtcgaattgtcactagatccagaaacagatgtc
caacccctcgactatcaacagttgaccagagttttcgcagattcagcatccgagcaagtt
ctgacctatttgttgcaagatacactcaagccagctacgtatagtacaaccaaaggacct
cactttggcttgtctttaccagagtacgttcatttcacttctcctttgcggcgttaccca
gatttactgatgcaaagggtattttatacattacttgaacacggacgcgatcgccgcacc
acccgtgtcaaagagcgtgttaacctgcgccactcaaacagccacggtgaaatcaactgg
aacgtcctaccgccagaattgcaacaagaactccaaagcgatttgacaagggtgattatt
cagctcaacgatagagaaaaagaagttcaagaagcagaagccgatttagcaggattgcaa
agagcctcactgatgaaacagcgtatcagcgaagttttcactggtgtgatcacaggtgtg
cagtcctacgggttctttgtagaaattgaagttccaccaactgtgtcaaactcagttagc
aatcctcgcgtacctctacgagtagaaggacttgtccacgtcagttctctcaaagacgat
tggtatgagtatcgcgccagacagcaggcgttatttggtcgcaaaaatcgtgcatcctat
agattaggcgatcgcgtagctgtacaggttaagagtgttgattattatcgccagcaaatc
gatttagtcactgttggcagcgatggcatgccagtttttggtaaagatgtcagcttctcg
aatggagaagatacaaacctttacttatcacatgaaactattgagcctgatgagttagac
ctgtatcctgaggaggaataa
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