Brasilonema octagenarum: DP113_07040
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Entry
DP113_07040 CDS
T10103
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
box Brasilonema octagenarum
Pathway
box03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DP113_07040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
box03021
]
DP113_07040
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_07040
Enzymes [BR:
box01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DP113_07040
Transcription machinery [BR:
box03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DP113_07040
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DP113_07040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
QDL14055
LinkDB
All DBs
Position
1642970..1644847
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AA seq
625 aa
AA seq
DB search
MRVAQNNQFDYVKIGLASPERIRIWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDST
LAGVEVGIGAEALLRLLADINLEESAESLREEITTAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLNIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRSDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPNATKGAGRYFTCLDD
VVMAYEQQQIDLHAYIYVRYDGEVETGEPDIEPVEVKPNDDGSRTLLYKFRRVREDAEGN
MMSQYIRTTPGRVIYNKAIQEAIAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagagtagcccaaaataatcagtttgactacgtaaaaatcggcttggcatcaccagaa
cgcattcggatttggggtgagagaactttgccgaatggtcaggtagttggtgaagtcaca
aagccagagacaataaattaccgtactttaaaaccggagatggatggcttgttctgcgag
cgcatctttggtccagctaaagattgggaatgccattgtggcaaatacaagagagtgcgt
catagaggtattgtgtgcgaacgctgtggcgtggaagtgactgaatcacgagtgcgccgc
caccgcatgggttacattaaactcgccgcaccagtcgctcacgtttggtatctcaaaggc
attcccagctatatctctatcctgctagatatgcctttgcgggatgtagagcaaattgtt
tatttcaattcctatgttgttctcagtcctggcaatgctgaaaccttaacttacaaacag
ttactgagtgaagaccagtggctggaaatcgaagaccaaatttactcagaagattcgacg
cttgctggggtagaggtcggtattggtgcagaagcgttgttgcggttgctcgccgatatt
aacttagaagaatcagctgaatccttgcgggaagaaattacgaccgccaaaggtcaaaag
cgggcgaagctgattaagcggctacgggtgattgacaacttcatcgccaccggatctaag
cctgagtggatggttatggctgtgattcccgttattcccccagatttgcgcccaatggtg
cagttggacggtggacgatttgcgacgagcgatttgaatgatttatatcgccgagtgatt
aaccgcaacaaccgtttggcacgcctgcaagaaattttggctccagagattattgttcgc
aacgaaaagcggatgctgcaagaagcagtggacgctttgattgacaatggtcgtcgggga
cgcacggtcgtaggcgcaaacaaccgaccactcaagtccttgtccgacatcatcgaaggt
aagcaaggacgtttccggcaaaacttactcggtaaacgggttgactactcaggacgttcc
gtgatagtcgtcggaccaaagcttaacatccaccagtgcggtttgccacgagaaatggca
attgagctatttcaaccgtttgtcatcaatcggctgattcgtagcggaatggtgaataac
atcaaagctgcgaaaaagttgatatctcgttctgacccgagtgtttgggatgttctagaa
gaagtgatagaaggacaccctgttctgctcaaccgtgcgccgacgctgcaccgtttgggt
attcaagctttcgagccaattttagtagaaggtcgagcaattcagctccacccacttgtt
tgtccagcatttaacgctgactttgatggtgaccaaatggcggtacacgtaccgttatct
ttggaatctcaagcggaagcacggttattgatgctggcgtctaacaacattttgtcacca
gcaactggtagaccaattattacacctagccaagacatggtcttaggggcatattactta
accgcagaaaatcctaatgcaacaaaaggcgcaggacggtactttacttgtcttgatgat
gttgtcatggcttacgaacagcaacaaattgacctccatgcctacatctatgtgcgatat
gacggcgaagtcgagacaggtgagccagatatagaaccggttgaagttaaacccaatgac
gatggtagccggactttgctgtataagttccgtcgagtcagagaagatgctgagggaaac
atgatgtctcagtatatacgtacaacaccaggtcgcgttatttataataaagcaattcaa
gaagcgatcgccagttaa
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