Brasilonema octagenarum: DP113_07545
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Entry
DP113_07545 CDS
T10103
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
box Brasilonema octagenarum
Pathway
box03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DP113_07545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_07545
Enzymes [BR:
box01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DP113_07545
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DP113_07545
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DP113_07545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QDL14139
LinkDB
All DBs
Position
complement(1769669..1770520)
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AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLNQLTLNQKITGVQVLLYRTLAHPFSVEEFLIGIKQSFIVTWHRRGK
YLLAELCLCSSGLSAGWLGVHLRMTGQLLWLDRDEPLHKHTRVRLFFGDERELRFVDQRT
FGQIWWVPPTVAPESIITGLGKLAVDPFSPEFSVEYLALKLRNRRRAIKTALLDQSVIAG
LGNIYADEALFMSGVLPQTLCTDLQPEQIERLHSSIIQVLKASIEAGGTTFSNFLNVKGV
NGNYGGVAWVYNRAGEPCRVCGTAIQRIRIAGRSSHYCVQCQR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcctgaggttgaaacagtccggcggggtctgaatcaattgacccttaac
caaaaaattacgggtgtccaggtgctgctttatcgcacgcttgcccacccgttttctgta
gaagagtttttgattggaatcaaacagagtttcatcgtaacttggcatcggcgcggcaaa
tatctgcttgccgaactctgcctttgttcctctggtttgtcagctggctggctgggggtt
catctgcgaatgacaggtcaacttctgtggttagatcgagacgaaccgttacacaagcac
acacgagtcagattattttttggagatgaacgcgaattacgctttgtagatcagcgtacc
tttggtcaaatctggtgggtacctccaacagttgcaccggaaagtattattacaggcttg
ggaaaactagcagttgaccccttttcaccggaatttagtgttgagtatttagcgcttaag
ctgcgaaaccgccgccgtgcaataaagacagcacttctggatcaatcagtaattgcgggt
ttaggtaatatctatgctgatgaagcgctatttatgagtggagttttaccacaaacttta
tgtacagatttgcaaccagagcaaattgagcgtttgcactcttcgatcattcaagtgtta
aaagctagtattgaagctggtggtactacgttcagtaatttcctaaatgtcaagggagtc
aacggtaactacggtggtgttgcttgggtttacaaccgtgctggagaaccctgccgagtt
tgtggtacagcaattcaacggattcggatagctgggcgttccagccactattgtgttcag
tgccaacgataa
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