Brasilonema octagenarum: DP113_08170
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Entry
DP113_08170 CDS
T10103
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
box Brasilonema octagenarum
Pathway
box03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP113_08170 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
box03019
]
DP113_08170 (recQ)
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_08170 (recQ)
Enzymes [BR:
box01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DP113_08170 (recQ)
Messenger RNA biogenesis [BR:
box03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DP113_08170 (recQ)
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DP113_08170 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
GerE
HTH_24
HTH_38
Motif
Other DBs
NCBI-ProteinID:
QDL14247
LinkDB
All DBs
Position
1923884..1926034
Genome browser
AA seq
716 aa
AA seq
DB search
MSQNPNLEQALKYYFGYDSFRLEQRQIIEQALQNRDLMIVMPTGGGKSLCFQLPALLKKG
LTVVVSPLIALMQDQVEALRDNGIAATFLNSSLNSYKVRSREEYILSGKVKLLYVAPERL
LSERFLPFLDLVHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLKSVRKRYPDIPVLALTA
TATERVRADIIQQLGLKQPSIHLASFNRTNLYYEVRSKTKYAYAQLLELIRETQGSAIVY
CLTRKKVDELTLKLQHDKISVLPYHAGLTDEERTKNQTRFIRDDVRVMVATIAFGMGINK
PDVRLVIHFDISRNLESYYQESGRAGRDGELSRCTLFYSYGDVKTIEFLINQKPDPQEQL
ISKHQLRQMIDYTEGTDCRRTIQLGYFGERFSGDCGNCDNCRYPKPVEDWTIEAMKFLSC
VARCKERFGMGHIIDVLRGAKTQKITQYEHDKLSTYSIGKDKTTDEWRMLGRSLLHQGLL
EQTADGYAVLKLNALSWEVMRRQRTVSIAVPVVQKLAWDEGNEKAAEMELLLQRLRALRK
QIADTQSVPPYVIFADSTLKLMVQVQPQTLHEFSKLSGVVSHKVSSYGEKFIAEIRAYRQ
EQGLLEENSTPFFGLPSETELLTLQLHQQGLSVTEIAVKRNLRPTTIIRHLSDLIEKNQS
VDFNLLVPVEKQQKILQVLEILGDISLTPIKEYLGDNYSFDEIRLVRGKWRRESQK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaaatcccaatttagaacaagcgctgaaatattactttggctacgatagcttt
cgcctcgaacagcgacaaatcatagaacaagcgctccaaaatcgggatttaatgattgtg
atgccgactggtggcggaaagtcgctgtgttttcaactaccagcactactcaaaaaaggt
ttaaccgtggtggtgtcaccgctgatcgccttgatgcaagaccaagtggaagcactgcga
gataatggaattgccgcaacatttcttaatagcagtctgaatagttataaagtgcgatcg
cgcgaagaatacatcctcagtggtaaagtcaaactgttgtacgtcgctccagaacgccta
ctaagtgaaagatttcttccctttcttgatttagtacatcaccaagttggcatttcagcc
tttgcgattgacgaagcacactgcgtttctgagtggggacacgactttcgtccagaatat
cgccaattgaaatcagtacgaaaacgctacccagatattcccgtccttgcgttgactgcg
acagcaactgagcgtgtccgtgctgatattatccaacaacttgggttaaagcaaccaagc
atccatctcgctagcttcaaccgcacaaacctttactacgaagtccgttctaaaacgaag
tatgcttacgcccaattgttggaactcattcgggaaacacaaggttcagcaattgtctat
tgcttgacgcgcaaaaaagttgatgaactgactctgaagctgcaacacgataagatttca
gtcttgccttatcatgctggattaactgatgaagaacgcaccaaaaatcaaactcgattt
attcgagatgatgtgcgtgttatggtggcaacaattgcctttggtatgggaattaacaaa
ccagatgtccggctagtcattcactttgatatctcccgtaatctggaaagttactatcag
gaatcaggtagagccggcagagatggagaactatctcgctgtacactcttctacagttac
ggtgatgtcaaaacaattgaatttctcatcaaccaaaaaccagaccctcaagaacagttg
atttccaaacatcaactgcggcagatgatagactacacagaaggaaccgactgccgacgg
acaattcagttaggatattttggggaacgtttttctggtgattgtggtaactgtgacaac
tgtcgttatcccaaaccagtagaagactggacaattgaagccatgaaatttctatcttgt
gtggctcgatgtaaagaaagatttggcatgggtcatattatagatgttttgcgaggagca
aaaacccagaaaatcactcaatacgaacacgacaaactttccacctacagtattggtaaa
gataaaactacagatgagtggcgaatgctggggcgttctctgttgcatcaaggcttacta
gaacaaacagctgacggttatgctgtcctgaaacttaacgccttaagttgggaagtgatg
cggcgacagcgaacagtttctattgcagttcctgtagtacaaaagctcgcctgggacgaa
ggaaatgaaaaagccgctgagatggaattactgttacaaaggttgcgtgctttacgtaaa
caaattgctgatacgcagtctgtcccaccatacgtcatcttcgctgattctaccctaaaa
ttaatggtgcaggtgcaaccccaaaccttacatgaattcagtaaactttctggtgtagtc
agtcataaagtttctagctatggagaaaaatttattgcagaaattcgcgcctaccgtcaa
gagcaaggtttactagaagaaaattccacaccttttttcggcttaccttcagaaactgaa
ttattgactttacagttacaccaacaaggtcttagcgtgacagaaattgccgtcaaacgc
aatcttcgccctacaacaatcattcgtcacctttccgatttaatagagaaaaatcagtca
gtagattttaatttgttagttcctgtagaaaagcagcagaaaattttgcaagtcttagaa
attcttggtgatatttccctaacacccattaaagaatatctaggtgataactatagtttt
gatgaaattcgcttggtaagaggaaaatggcgacgggaaagtcaaaaataa
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