Brasilonema octagenarum: DP113_09340
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Entry
DP113_09340 CDS
T10103
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
box Brasilonema octagenarum
Pathway
box03410
Base excision repair
box03430
Mismatch repair
box03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DP113_09340 (recJ)
03430 Mismatch repair
DP113_09340 (recJ)
03440 Homologous recombination
DP113_09340 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_09340 (recJ)
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DP113_09340 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DP113_09340 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DP113_09340 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QDL14447
LinkDB
All DBs
Position
2193163..2195490
Genome browser
AA seq
775 aa
AA seq
DB search
MPEQQWILATTEQPPEWFIQAVKQYAPASSGHFAAQLLWQRGIRKNAQLAAFVNSQAYQA
ASPFEFGQEMHLAVERLQQARHAGEKVAIWGDFDADGITSTAVLWDGLGQFFAQNTQLVY
YIPNRLTESHGLNCQGIEKLAKEDFKLIVTCDTGSTNISEIIYAKQLGVDVIVTDHHTLP
VERPPVTAIINPRYLSQTHQLFHLSGVAVAYKLVEAFYQTLPNVGQQPLEDLLDLVAVGL
IADLVQLSGDCRYLAQLGIGRLQDDFKKTPDKRRRPGVGRLLELCQKSGDRPTDISFGLG
PRINAVSRIQGDASFCVELLTSRDQKRVNELAEVTELANSRRKSLQKDVAGQVALKLSKM
DLSTTSVIVLEDPQWAVGVLGLVAGQVAQETGRPTILLSTEVAGEQGSNLSPVLLARGSA
RSINSVDLYQLVKDQAHLLHRFGGHPYAAGLSLRVENIPLFTQAINQRLRQSLGGANLTP
NVQADLAVTVADLGKDLFLELKLLEPCGMGNPVPKLLIQNCWFENTWHRNQQDSQGKKVQ
YIKAEFDIRDDSTRNPFPGVWWGHYKDELPPGRCDCIAELDYNTFKKRYEIRLIAVRSRT
NSALSTQHAKLILDLRNLPLEKELALTTDHSGLILQECPTSWDDLRAHLRRSLHNQQPLV
LAWLKPNSQPPEQTWLTLVGIAKYLGRTNQPVTRIQLLEKLGINDQTLLFGLRSLRYLGF
NISRQDRMLVFTQHSTIETTQAEAAVEKFLAAVREEQFQRQYFAEVPLSVIEAIA
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacaacagtggattcttgcgacaactgaacaaccccccgaatggtttatccaa
gcggtgaagcaatatgcacctgcatcgagtggacattttgccgcacagttgttgtggcaa
cgaggaatacgaaagaacgcacaattagcagcttttgtcaattcacaagcttatcaagcc
gcgagtccatttgagtttgggcaagagatgcatctggcggtggaacggttgcaacaagca
cgacatgctggggaaaaagttgctatttggggagactttgacgcggacggtatcacgtct
acggctgttctgtgggatggtttgggacaatttttcgctcaaaatacgcagcttgtttat
tacattcctaatcgtttaacggaatctcacggtttgaactgccaaggaattgagaagctt
gcaaaagaagactttaaattgattgtcacttgtgacactggcagtacaaatattagtgaa
attatttatgctaagcagttaggtgtagatgttatagtcacagaccatcacactttacct
gtggaacgtccccctgtgacggcaattattaaccctcgctatttgagccaaacacatcaa
ctgtttcatctttctggggtggcggtggcttacaagttggtggaagctttttatcaaact
ctgccaaatgtcgggcaacaaccgctagaagatttgttggatttagttgcagttggactg
attgctgatttggtgcagttgagtggagattgtcgctacttggcacagttgggaattggg
cgactgcaagacgattttaagaaaacaccagataagaggcggcgtccaggtgtcgggcgg
ctgttggaattatgccagaaaagtggcgatcgccccacagatatctcctttggtttaggt
ccccgaattaacgctgtcagccgcattcaaggcgatgcttctttttgcgtggaattactc
acaagccgcgatcaaaagcgtgtgaatgaacttgcagaagtcacagaattagcgaacagt
cgtcgcaagtctttgcagaaagatgttgctgggcaagtcgcgctgaagctttccaaaatg
gacttatcaaccaccagcgttattgtcttggaagatcctcaatgggctgttggcgttttg
gggttagttgcaggacaagtcgcacaggagacaggacgcccgacgattcttttgagtacg
gaggtagccggggagcaggggagcaatctttctcctgttcttctggcgcggggttcggcg
cgttctattaattcggttgatttataccaattggtaaaagaccaagcacatttgttgcat
cgatttggcggacatccttatgcagcagggttaagtcttcgagtagagaacataccttta
tttacacaagcaattaaccagaggttacgtcaatcgttgggaggagcaaacctaacacca
aatgtacaagcggacttggctgtaacggtagcagatttggggaaagatttatttttggaa
ctgaagctgctagaaccctgtggaatgggaaacccagttccaaaacttttgattcaaaac
tgttggtttgaaaatacttggcatcgcaatcagcaagattctcagggaaaaaaggtacag
tacataaaagccgagtttgatattcgagatgactccacgagaaatccttttcctggcgtg
tggtggggacactataaagatgaattacctcccggacgatgtgactgtatcgcggaactg
gactacaacacctttaaaaaacgctatgaaatccgactgatagctgttcgttcccgcaca
aactcagcattgagtacccagcatgcgaaactcattttagatttacgcaacttaccatta
gaaaaagagttagcactaaccactgatcattcaggactcatactgcaagagtgtccgaca
agttgggacgatttacgtgcgcatttgaggcgatcgctccacaaccaacaacccctcgtg
cttgcttggttaaaaccaaattcccaaccaccagaacaaacctggcttacgcttgtagga
attgccaaatatctgggccgcacaaatcaacctgttacccgtatccagttattagaaaaa
cttggtattaacgaccaaaccttactttttgggttaagaagtttgagatacttaggtttt
aatatctcacgtcaagaccgtatgttggttttcactcagcactctaccattgaaacaact
caagcagaagctgcggtggaaaaatttttagctgccgttcgggaagaacaatttcagcga
cagtattttgcggaagttccgttatctgtaattgaggcgatcgcataa
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