Brasilonema octagenarum: DP113_09890
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Entry
DP113_09890 CDS
T10103
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
box Brasilonema octagenarum
Pathway
box03420
Nucleotide excision repair
box03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DP113_09890 (pcrA)
03430 Mismatch repair
DP113_09890 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_09890 (pcrA)
Enzymes [BR:
box01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DP113_09890 (pcrA)
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DP113_09890 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
DP113_09890 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
DEAD
AAA_30
Viral_helicase1
AAA_12
ResIII
Terminase_6N
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
QDL14537
LinkDB
All DBs
Position
2314615..2316960
Genome browser
AA seq
781 aa
AA seq
DB search
MTTTTDFLSHLNPSQRRAVEHHCGPLLVVAGAGSGKTRALTYRIANLILQHRVDPENILA
VTFTNKAAREMKERIQKLFADRLAITEYNERFDLLPEDDQTKLKSKVWKNYIKDMWCGTF
HSLLSRVLRFDIDKYQDEKGRQWTRNFSIFDESDAQSLVKEIVTKQLNLDNKKFEPRSVR
YAISNAKNQGLSPKEFETEQPNYRGRVIAEVYNHYQSRLAQNNALDFDDLILVPVRLFQQ
NEQVLGYWHNKFRHILVDEYQDTNRTQYELIRLLTTNNETKKTDWDWTNRSTFVVGDADQ
SIYSFRMADFTILLDFQQDFGDGLPDDDTRTMVKLEENYRSCENILQAANQLIENNTQRI
DKILKATRGAGEEIFCHKADDEIAEADFVIKEISSLENQHPELNWGSFAILYRTNAQSRP
FEELLVRSGIPYTVVGGIKFYDRKEIKDVLAYLRAIANPADTLSLLRVINTPRRGIGKAT
IDALVNAAQELGTTLWEILIDETSVNTLAGRSAKAVNTFAQMIRHLQEQIETVPVSELVQ
GVLENSGYIKDLETQSTDEAEDRLQNVQQLFNAALQFEEENEDVNLQAFLASTALSSDLD
NLKEGETAVSLLTLHASKGLEFPVVFLVGMEQGLFPNYRSMNDPASLEEERRLCYVGITR
AQERLYITHARERRLYGSREPALRSQFLDELPEELLMTRQKSTVAYTKGTAGSTAQRTTK
RNQDTTASWQVGEKVLHKAFGIGEITHIFGSGNKVSLAIKFDSLGQKIIDPRVAQLQRVE
W
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaccacagactttctcagtcaccttaaccccagtcaacgccgcgctgttgaa
catcactgcggtcccctactcgttgttgctggtgcgggttccggcaaaacacgagcgctg
acttatcgcattgctaatcttattttgcaacatcgtgtcgatccagaaaatatcctggcg
gtaaccttcaccaacaaagccgcacgggaaatgaaagaacgtattcaaaaattatttgcc
gatcgcctagcaatcacagaatacaacgagcggtttgatttattgccagaagacgaccaa
accaagctcaagtcgaaagtctggaaaaattatatcaaagatatgtggtgcggtactttc
cacagtctactttctcgcgttctccgctttgacatcgacaaataccaagacgaaaaagga
cgccaatggacgcggaatttttccatctttgatgagtccgacgcccaaagcctggtgaaa
gaaatcgtcaccaaacaacttaatctggataataaaaagtttgaacctcgttctgtgcgc
tacgccattagtaacgccaaaaaccaaggcttatcacccaaagaatttgaaacagaacaa
cccaattatcgcggacgggtgatagcagaagtttacaatcactatcaaagccgacttgca
cagaacaacgccctcgactttgatgatcttatcctcgttcctgtcagattgtttcagcag
aacgagcaagtcttaggttattggcataataagtttcgccatatcctggtagatgaatat
caggataccaaccgcactcaatacgaactcatccgtcttttgacgacgaataacgaaacc
aaaaagactgattgggactggacaaatcgttccactttcgtggtaggtgatgcagaccaa
tcgatttattcatttagaatggcagatttcaccatcttgttggactttcagcaagatttt
ggcgatggtttaccagacgacgatacccgcacgatggtgaagttggaagagaattatcgc
tcttgtgaaaatattttgcaagcagcaaaccaactgattgaaaacaacacccaacgtatt
gataaaatcctcaaagcaacaagaggtgcaggtgaggagattttttgtcataaagcagat
gatgaaattgcagaagcagattttgtcattaaggaaattagttctttggaaaatcagcat
ccagaattgaattggggaagttttgccatactttatcgtaccaacgcccaatctcgaccg
tttgaagaattattggtgcgatcaggaattccctacacagttgtcggagggataaagttt
tacgatcgcaaagaaattaaagatgtcctggcttacttgcgggcgatcgccaacccagct
gatacactcagtttattgcgagtgattaatactcctcggcgcggaattggtaaagccacc
atcgacgcactcgtaaacgccgctcaagaattaggcacaaccctgtgggaaatactgatt
gatgagacatcagtaaacacattggctggacgttctgccaaagctgttaatacttttgcc
cagatgattcgtcatttacaagaacaaatagagacggttccagtttccgaacttgtgcaa
ggggtgttggaaaactctggctacattaaagacttggaaactcagagtacagatgaagca
gaagacaggttgcaaaacgtccaacaattattcaacgctgcgctgcaatttgaagaagag
aacgaagatgtgaacctgcaagccttcctcgccagtaccgccctcagttctgatttggat
aacttaaaagaaggagaaacagcagtttcgctgttaactttacacgcctccaaagggctg
gagtttcctgttgtgtttttagtggggatggaacaaggactatttcctaactaccgttca
atgaatgatccagcatctttggaagaagaacgtcggttgtgctacgtcgggattactcgc
gcccaagaacgattgtacataacccacgcccgcgaacgccgcctttatggttctcgggaa
ccagctttgcgatcgcaatttctcgacgaattacccgaagaattactaatgactcgacaa
aaaagcactgttgcttatacaaaaggtactgctggtagcacagcccaacgtacaaccaaa
cgaaaccaagacactactgctagttggcaagtcggcgaaaaagttctgcacaaagccttt
ggtattggagaaattactcacatttttggttcaggaaataaagtttctttggcaattaaa
tttgatagtttggggcaaaaaattatcgatccaagagttgcacagttgcaacgggtggag
tggtaa
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