Brasilonema octagenarum: DP113_26035
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Entry
DP113_26035 CDS
T10103
Name
(GenBank) trans-splicing intein-formed DNA polymerase III subunit alpha N-terminal partner DnaE-N
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
box Brasilonema octagenarum
Pathway
box03030
DNA replication
box03430
Mismatch repair
box03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
box00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DP113_26035
03430 Mismatch repair
DP113_26035
03440 Homologous recombination
DP113_26035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
box03032
]
DP113_26035
03400 DNA repair and recombination proteins [BR:
box03400
]
DP113_26035
Enzymes [BR:
box01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DP113_26035
DNA replication proteins [BR:
box03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DP113_26035
DNA repair and recombination proteins [BR:
box03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DP113_26035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
QDL17262
LinkDB
All DBs
Position
complement(6196727..6199357)
Genome browser
AA seq
876 aa
AA seq
DB search
MSFVPLHIHSDYSLLDGASQLPDLADRAIELGIKAIALTDHGVMYGAIELIKICRNKNIK
PIIGNEMYIINGDITKQERRPRYHQVVLAKNTKGYKNLVKITTISHLQGVQGKGIFSRPC
VNKELLKQYHEGLIVTSACLGGEVPQAILSGKLEAARKVARWYKEVFGEDYYLEIQDHGS
QEDRIVNVEIVKIARELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLISDDKRMRYSG
TEYLKSAEEMKALFRDHLPDDVIEEAVLTTVEVADKVEPYQILGEPRIPNYPIPSGHTAD
TYVEEVAWQGLLQKLNSKSRNQIDQTYKDRLEYELKMIQKMGFSSYFLVVWDYIKFARDK
NISVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIEQRDKV
IDYVTEKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGESDKMAKLIPVSRGKPTKLK
VMISEATPSPEFKEKYDNDPKVQHWLDMAIRIEGTNKTFGVHAAGVVISAEPLDEIVPLQ
KNNDGSVITQYFMEDLESLGLLKMDFLGLKNLTMIQKTIDLISLHKKITIDPYDITSYER
EAQRRLAKGKLSTLPTEVEKTYQLLEAGELEGIFQLESSGMRQIVRDLKPSNIEDISSIL
ALYRPGPLDAGLIPKFINRKHGRENIEYETEILEPILDETYGIMVYQEQIMKIAQDMAGY
SLGQADLLRRAMGKKKVEEMMKQREKFVDGAAKNGVKKQIAEDLFEQMLKFAEYCLSYDT
EVLTIEYGFLPIGQIVEKRIECSVYTVDNNGNIYTQPIAQWHERGQQEVFEYCLEDGSVI
QATKDHKFMTTDEQMLPIDEIFERGLELMQVKGLPK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgtccctttgcacattcatagtgattacagtctgcttgatggagcaagtcaa
ctgccagatttagcggatcgcgccatcgaactggggattaaagcaatagccctgacagat
catggtgtgatgtatggtgcgatcgaactgattaaaatttgccgcaataaaaatatcaag
ccaattatcggcaacgaaatgtatatcatcaacggcgatattacaaaacaagaacgccgt
ccccgctatcatcaagttgttttagccaaaaatacaaaaggatataaaaatttagtcaag
atcacaacaatttctcatcttcaaggtgtgcagggcaaaggcattttttcccgtccttgt
gtaaataaagaattattaaaacagtaccatgaaggcttaattgtaacgagtgcttgtttg
ggtggagaagttccgcaagcaattctcagtggtaaattagaggctgcacgtaaagttgct
cggtggtataaagaagtctttggtgaagattattatttagaaattcaagaccacggctcc
caagaagaccggattgttaatgtagaaattgtcaaaattgcgcgggaacttggtattaaa
attatcgccaccaatgactcacattttatttcttgttacgatgttgaagcacacgatgct
ttgctatgcattcaaactggcaaattgatttctgacgataagcgaatgcgttatagcggg
acagaatatctgaaatctgctgaggaaatgaaggcgctgtttcgcgaccatttaccagat
gatgtcattgaagaagctgtgctcaccacagttgaagttgcagataaagtcgaaccttac
caaattttaggtgaacctcgcattcccaattatcccatcccatctggtcatactgctgat
acatatgttgaagaagttgcttggcaaggacttttacaaaaattaaatagtaaatctaga
aatcaaattgaccaaacttataaagataggttggagtatgaactaaaaatgattcagaag
atgggtttctccagctactttttagttgtatgggactacatcaaattcgcgagagacaag
aatatttctgtaggtcctggtcgtggttctgctgcagggtcattggttgcttacactatg
gggataactaacattgaccccgtacatcatggactgctctttgaaagattcctcaatcca
gaacggaaatctatgcctgatattgatacagatttctgtatcgaacaacgggataaagtc
attgattatgttacagaaaaatacggtaaagagagagtcgcccaaatcattacctttaac
cgcttgacttcaaaagcagttttaaaagatgttgccagagtcttaaatattccctatggg
gaatcagacaaaatggcaaaacttattcctgtttcccgaggaaaacccaccaaacttaaa
gtgatgatttctgaagccacaccatcaccagagtttaaagaaaaatatgataatgaccca
aaggtacagcattggcttgatatggcaatccgtattgagggaacaaacaaaacatttggt
gtgcacgctgcaggtgtggtaatttctgctgaaccgttggatgaaattgtgccactacaa
aaaaataacgacggttctgtgatcacccaatatttcatggaagatttggaatcactgggc
ttgctaaaaatggattttctgggtttaaaaaacttgacgatgattcagaaaaccatcgat
ttgatttcgctacacaaaaaaattaccattgacccatatgacatcacgagttatgaaaga
gaagctcagagaagattagcgaaaggtaaattgagcaccttgccaacagaggttgagaag
acttatcaactattagaagcaggcgaattagaaggtatctttcaattagaatcttctgga
atgcggcaaatagtacgcgatttaaagccttccaatatagaagatatttcctcgatttta
gcactatatcgaccaggtccattagatgcaggactgattcccaagtttattaaccgcaag
catggtcgagaaaatattgagtatgaaaccgaaattttagaaccgatcttagatgagacc
tatggaattatggtctatcaagagcaaattatgaaaattgctcaagatatggctggatat
tctttaggacaggcagatttgctgcgccgtgcaatgggtaaaaagaaagttgaggaaatg
atgaagcagcgagaaaagtttgtggatggcgctgcgaaaaatggagtaaaaaaacaaatt
gctgaagacttattcgagcaaatgttgaagtttgctgaatattgtctcagctatgacaca
gaagtgttaaccatagaatatggctttttacctattgggcaaattgtagaaaaaagaatt
gagtgtagcgtctacacagttgataataacggaaatatttacacacaacctattgctcaa
tggcatgagcgcggtcagcaagaagtttttgaatactgtctagaggatggttctgttatt
caggcaacaaaagaccataaatttatgacgactgatgagcaaatgttgccaattgatgaa
atatttgaacggggtttggagttgatgcaggttaagggtttacctaaatag
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