Bradyrhizobium ontarionense: LQG66_19650
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Entry
LQG66_19650 CDS
T10106
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
boy Bradyrhizobium ontarionense
Pathway
boy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQG66_19650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boy03019
]
LQG66_19650
Enzymes [BR:
boy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LQG66_19650
Messenger RNA biogenesis [BR:
boy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQG66_19650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
SUa-2TM
DUF8086
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UFZ08414
UniProt:
A0ABY3RPX4
LinkDB
All DBs
Position
4423637..4425049
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AA seq
470 aa
AA seq
DB search
MTSFQDFSLADALTRALKEENYHTPTPIQVQTIPLALEGRDVIGIAQTGTGKTASFALPI
LHRLLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMGRQVR
AVMPGVEVLVATPGRLLDMVQGNAVKLSQVEFLVLDEADRMLDMGFINDIRKIVAKLPIK
RQTLFFSATMPKDIAELADAMLRNPARVAVTPVSSTVERITQRVIQVDHSAKPNLLAQLL
KEEPVNRALVFTRTKHGADKVVKGLERAGIPAQAIHGNKSQNHRERVLAAFRSGEIRTLV
ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADELSYLRD
IERLIKTTLPREDRRIPGHREAAPPAAKPPHRGGRPGMQNARTNDSGNAAKGPRRRRGSN
AKVASLPSNRQEPNRPSQGGGKAGSIQGVAFLHREGRPKTHAHNRNQRPN
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
ttgacatccttccaggattttagcctcgccgacgcgctgacgcgcgcgctgaaggaagag
aactaccacacccccaccccgatccaggtacagacgattcctttggccctcgaaggccgc
gacgtgatcggcattgcccagacaggaaccggcaagaccgcctcgttcgcgcttccgatc
ctgcatcgcctgctcgagaaccggatcaagccgcagccgaagacggcccgcgtgctggtg
ctgagcccgacccgcgaactgtccggccagatcctcgacagcttcaacacctatggccgc
cacatccgcctgagttctgcgcttgccatcggcggcgtgcccatgggacgccaggtgcgc
gcggtcatgccgggcgtcgaggtgctggtcgccacaccgggccggctgctcgatatggtc
cagggcaacgccgtcaagctgtcccaggtcgagttcctggtgctcgatgaagccgaccgc
atgctcgacatgggcttcatcaacgacatccggaagatcgtagccaagctgccgatcaag
cggcagacgctgttcttctcggcgaccatgcccaaggacatcgccgaactcgccgatgcc
atgctgcgcaacccggcgcgcgtcgcggtgacccccgtctcctcgacggtcgagcgcatc
acgcagcgcgtgatccaggtcgaccactccgccaagccgaacctcctggcgcagctgctc
aaggaggagccggtcaatcgtgcgctggtgttcacgcgcaccaagcacggcgccgacaag
gtggtgaagggcctcgaaagggccggcatccccgcccaggcgattcacggcaacaaatcg
cagaaccatcgggaacgcgtgctggcggccttccgctccggcgaaatccgcacgctggtg
gcaaccgatattgccgcacgcggcatcgacgtcgacggcgtcagccatgtcgtgaacttc
gatctgccgaacgtccccgaaacatacgtccaccgcatcggccgcactgcgcgcgccggg
gccgacggggtcgcgatctcgctggtggcgggagcggacgagttgtcctacctccgcgac
atcgagcggctgatcaagaccacgctgccgcgcgaagatcgtcgtattccgggccaccgc
gaggccgcgcctccggccgccaagccgcctcaccgcggcggccgtcctgggatgcagaat
gcgcggaccaacgatagcggcaacgccgcaaaaggccctcgccgtcgtcgcgggtccaat
gctaaggtggcgtctctgccaagcaatcgtcaggagcccaaccggccgtcgcaaggcggc
ggcaaggcggggtcgattcagggcgtcgctttcctgcatcgcgagggcagacccaaaacc
cacgctcacaaccgcaatcaacggccgaactag
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