Bradyrhizobium ontarionense: LQG66_25220
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Entry
LQG66_25220 CDS
T10106
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
boy Bradyrhizobium ontarionense
Brite
KEGG Orthology (KO) [BR:
boy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boy03019
]
LQG66_25220 (hrpB)
Enzymes [BR:
boy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LQG66_25220 (hrpB)
Messenger RNA biogenesis [BR:
boy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LQG66_25220 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
HA2_C
Flavi_DEAD
AAA_30
AAA_19
Hydrolase_like
ResIII
Motif
Other DBs
NCBI-ProteinID:
UFZ02569
LinkDB
All DBs
Position
5711957..5714431
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AA seq
824 aa
AA seq
DB search
MSLRFDTPLPIDAVLDELSGTLARSNTAVLVAPPGAGKTTRVPLALLDAPWVGTRKIIVL
EPRRIAARASAERMAKSLGERAGDTVGYRVRFGSKISRATRIEVVTEGIFTRQILDDPEL
GGVAAVLFDEFHERSLDADLGLALARDAQQGLREDLRILVMSATLDGARVAKLLGDAPVV
ESEGRAYPVETRYVGRKPDAPVERQMAETIASALRADSGSVLAFLPGAAEIRRTQTMLTE
RIHDAAIEIVPLFGALDAAVQDRAISPAPKGSRKVVLATSIAETSLTIEGVRIVVDSGLA
RVPRYEPDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTASLAAYTQPEIL
SADLSSLVLDLAQWGVSDPFALGFLDPPPLPAWKEARDLLSELGALDADGRLTDEGRRLR
ALALPPRLARMIVDSADDGAAAQAADIAAILTERGLGGDSVDLEVRLDQFRRDRSPRAQS
ARELARRWAQQVASSSSQQGGGDISTGMMLAFAFPDRVARNRGNGSFVLANGRGAAVEQT
SALARAPYIAVGELTGTAASGRILLAAALAIEDIERHFAAQIEARDEVSFDRDAMALRAR
RRRKLHAITMADAPVALTPSEETARIFAEGICAAGLERLPWSKAAKQWRDRVMFLRKAEG
DSWPDLSDTGLAERREDWLVPLLADKTSLRDVSPGEVSDAVMALLPWDLRARLDREAPTH
FEAPTGTMLAIDYEAEQGPTIAVRLQELFGLDVHPSIAKGAVPLVLELLSPAQRPVQVTR
DLPGFWRGSYAAVRTDLRGRYPRHPWPDDPAHAVPTRRAKPRGT
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ttgtcccttcgcttcgacacaccgctgcccatcgacgccgtgctggacgagctgtccggc
acgctcgcgcgcagcaataccgccgtcctggtggcgccgccgggcgccggcaagacgacg
cgggtgccgctggcgctgctggatgcgccctgggtcgggaccaggaagatcatcgtgctg
gagccgcggcgcatcgcggcgcgcgccagcgccgagcgcatggccaagtcgctgggcgag
cgcgccggcgacaccgtcggctaccgcgtgcgcttcggctcgaagatctcgcgcgcgacc
cgcatcgaggtcgtcaccgagggcatcttcacccggcagattctggatgaccccgaactc
ggcggcgtcgccgccgtgctgttcgacgaattccacgagcgctcgctcgatgcggacctg
ggccttgcgctggcgcgcgatgcgcagcagggcctgcgtgaggatctccggatcctcgtg
atgtcggcgacgctcgatggtgctcgggtggcgaagctgctcggcgatgcgccggtggtc
gagagcgagggccgcgcctatccggtggagacgcgctatgtcggccgcaagccggacgcg
ccggtcgagcgccagatggcggagacgatcgcgagcgcgctgcgcgccgactcaggctcc
gtgctggccttcctgcccggcgcggccgagatccggcgcacgcagaccatgctgaccgag
cgcattcacgatgcggccatcgagatcgtcccgctgttcggcgcgctcgatgccgcggtc
caggatcgggcgatttcgcccgcccccaagggcagccgcaaggtcgtgctggcgacctcg
atcgccgagacctcgctgacgatcgagggcgtgcggatcgtggtggattccggcctcgcc
cgtgtgccgcgctacgagccggatatcggcctgacccggctggagacggtgcgggcctcg
cgcgccgccgtcgatcagcgccgcggccgcgccggccgcaccgagccgggcgtctgctac
cgtctgtgggacgagccgcagaccgcctcgctggcggcgtatacgcagccggaaatcctc
agcgccgatctgtcctcgctggtgctcgatctcgcgcaatggggcgtcagcgatcccttt
gcgctcggcttcctcgatccgccgccgcttccagcctggaaggaggcgcgggacctgctg
agcgaacttggtgcgctcgatgccgacggccgcctgaccgacgagggccggcggctgcgg
gcgctggcgctgccgccgcggctcgcccgcatgatcgtcgattcggccgacgacggagcg
gccgcgcaagcggccgacatcgctgcgatcctgaccgagcgcggtcttggcggcgacagc
gtcgatctcgaggtgcggctcgaccagttccgccgcgaccgctcgccacgtgcgcagagc
gcgcgtgagctggcgcggcgctgggcgcagcaggtggcgtcgtcgtcctcccagcagggg
ggaggggacatctcgaccggcatgatgctcgcgttcgccttccccgaccgggtcgcgcgc
aaccgcggcaacgggagcttcgtgctcgcgaatggccgcggggccgcggtcgagcagacc
tcagcgctggcgcgcgcgccctatatcgccgtcggcgagctgaccgggacggcggcgagc
ggccgcatcctgctcgcggcagcgctcgcgatcgaggacatcgagcgccacttcgccgct
cagatcgaagcccgcgacgaggtcagcttcgaccgggacgcgatggcgctgcgggcgcgc
cgcaggcgcaagctgcacgcgatcacaatggccgatgcgccggtcgcgctgacgccgtcc
gaagaaactgcgcgcatctttgccgagggcatctgcgccgccggcctcgagaggttgccc
tggtcgaaagcggcgaagcaatggcgtgaccgggtcatgttcctgcgcaaggccgaggga
gacagctggccggacctgtcggacaccggccttgctgagcggcgcgaggactggctggtg
ccgctgctcgccgacaagacctcgctgcgtgatgtctctcccggcgaggtttccgacgcc
gtcatggcgttgctgccgtgggatctgcgcgcccggctcgaccgcgaggcgccgactcat
ttcgaggcgccgaccgggaccatgctcgcgatcgactacgaggccgagcagggcccgacc
atcgcggtccggctgcaggagctgttcgggcttgatgtccacccctcgattgccaagggg
gcggtgccgctggtgctggagctgctatcgccggcacagcggccggtgcaggtcacgcgc
gatctgcccggtttctggcgcggctcctatgccgccgtccgcaccgacctccgcggtcgc
tacccgcgccatccctggccggatgaccctgcgcatgcggttccgacgcgccgagcgaag
ccacgggggacatag
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