Orrella marina: DBV39_08860
Help
Entry
DBV39_08860 CDS
T05532
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
boz
Orrella marina
Pathway
boz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBV39_08860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boz03019
]
DBV39_08860
03009 Ribosome biogenesis [BR:
boz03009
]
DBV39_08860
Enzymes [BR:
boz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DBV39_08860
Messenger RNA biogenesis [BR:
boz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DBV39_08860
Ribosome biogenesis [BR:
boz03009
]
Prokaryotic type
rRNA processing factors
DBV39_08860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AWB33799
UniProt:
A0A2R4XJB7
LinkDB
All DBs
Position
1975384..1978686
Genome browser
AA seq
1100 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEERHGFLPFKEVARSYFKEGIDVRSARIQDALKEGQELIVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAMDQLDIPQGMSIIARTAGIGRSVEELQ
WDLSYLMQLWHAIDGAAKSNPAPILIYLESSLVIRAIRDYFSPDIGEILIDTDDIADQAS
AFMSVVMPDNVHRVKRYQDDVPLFSRFQIEHQIETAYSRHVNLPSGGSIVVDHTEALVAI
DVNSARSTRGADIEETALRTNLEAAEEAARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQK
LREALHVDRARVQMGKISRFGLMELSRQRLRPALSEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAIHAQVPVEVATFLLNEKRSDITKIEARLKVNLMLIPNKHLETPH
HIIERLKHDDQRLEDLKSSFDLIQAPPTDTGWAPKESDTRIKPEALVKAITPSQPAPQSS
TAKTSGASQTRQAQPKAETTEDAIRLPGLLSRFMAWLTGASTATTTEETPTAKSESAGRS
RNSGSRRNASQTDGQSSGSRGRRPSKPQSRQADHQQGTERKADESSPSPATVSEVPGQED
QAQSESSSRSRNNRSRRSRSRNKAQNLAATSETANTQMVDQQAEQNTPEPVTTQDTDATD
TSVDQARNDEQQNGEQLDRPRRRSRRGRRSRRPSEANGQSTDQNVENQDGPASEDKQVTD
NRSSGPDAPSQQVDDKADRTSAPAQATAVASVVATDLATNAVSAPHVAEPEKEPAFKESS
AEEAPSTKPVSGQTTSESVSEPVKSKLTNVEDSEIASDAITSALPENKPVEPTLLATDAT
DANLTSVDADGQTASEDKPTRGADQESANLPAQAKSEKGEALNSNPIEQVAAASSAETRD
VTSQGESSVEESAVEQTVPERQIDSQVNHVADTAESDASESPIRLASEETTQTEEIRVSN
SVSKGSRSNSNIGELNDADRETLHAIIESAGLKWVESNPERVAQAKEASSGSPTRLGREP
RQIVKAENQELVQVETRQHA
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcaacgcaccaagaagagttacgcgttgctatcgttgat
gggcaaaagctcattgacctggatatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaaaggagtcatcacccggatcgaaccaggtcttgaggcctgctttgtcaattac
ggtgaagagcgtcacggcttcctgccttttaaggaagttgctcgttcctatttcaaggaa
ggaatcgatgtccggtcagccaggatccaggacgcactcaaggaaggccaggagctgatc
gtacaggtcgagaaggaagagcgcggcaataaaggcgctgccctcacgacatttgtttcg
ctcgcaggccgctacctggtcctgatgccgaacaaccctcgcggtggtggcgtgtcgagg
cgagtcgaaggcgaggaccgccaggaactgcgcgaagccatggaccagctcgacatcccg
caggggatgagcatcatcgcacgcaccgctggtatcgggcgatctgttgaagagctgcaa
tgggatctttcctatctgatgcaactctggcacgcgattgacggcgcagccaaatccaac
ccggccccgattctcatttatctggaatccagtctggttatccgtgccatccgcgattac
ttctcgccagacatcggtgagatcctgatcgacacggatgacattgccgaccaggccagc
gcgttcatgagcgtggtgatgccggacaacgtccatcgggtcaagcgctatcaggatgac
gtcccgctgttttcacggtttcaaatcgagcaccagatcgaaacagcctattccagacac
gtcaatctgccttctggtggatcgatcgttgtcgaccacactgaggcgctggtcgcaatc
gacgtaaactcggcgcgctctacgcgtggcgctgatattgaagaaactgcgctgcgaacg
aacctcgaagcagcggaagaggccgcgcgccagctgcgtttgagagaccttggcggtctg
atcgtgatcgatttcatcgacatggaagacagcaagaaccaacgtgctgtcgaacagaaa
ctgcgcgaagctctacatgtggaccgggcacgggttcagatgggcaagatttcccgcttc
ggcctgatggaactatccagacagagacttcgcccagccctgagtgaaggatcgcacatc
acctgcccccgctgtaacggaacaggtgtaattcgtgatgcagagtccagtgcgcttcat
gtgttgcgtctgctccaggaagaggcgatgaaggaaaacactgcggccatccatgcccag
gttcctgtcgaggtcgcaacgttcctgcttaatgaaaagcgtagcgacatcaccaagatt
gaggctcgcctcaaagtcaatttgatgctgattccaaacaagcatctggaaacgccccat
cacatcattgagcgtctgaagcatgatgaccagcggcttgaagatctcaaatccagtttc
gacctgattcaagcccctcccaccgacactggctgggcaccaaaagaatctgacacacgg
atcaagcccgaggcactggtcaaagcgatcacgccttcacagcctgcaccacaatccagc
accgcaaaaacatcaggcgccagtcaaacccgtcaggctcaaccaaaggccgagacaact
gaggatgccattcgccttcccggactgctttctcgtttcatggcatggctgaccggcgca
tcaacggcgaccacgaccgaagagacacctaccgcaaagtctgaaagcgctggacgcagt
cgcaacagcggctcacgtcgtaacgcttcacaaaccgacggtcagtcttctggctcccgc
ggtcgccgcccatccaagccgcagagtcgtcaagcagatcatcagcaaggcaccgaacgc
aaggccgatgagtcaagcccaagtccggcaaccgtatctgaagtccccggccaggaagac
caggcccagtccgaatcgtcaagccgctcacgcaacaaccgcagtcgtcgcagtcgctcg
cgcaacaaggcccagaacctggcagcaacttccgagaccgccaatacgcagatggtggat
cagcaagctgagcaaaatacgcctgagccagtcactacgcaagacactgacgctacagat
acatcagtcgatcaggcacgcaatgatgaacagcagaacggggaacaactcgatcgtccg
cgtcgccgcagtcgccgtggacgccgttcacgccgcccgagcgaagcgaacggtcagagt
accgatcagaatgtagagaatcaggatgggcccgcttctgaagataagcaagtcactgac
aatcgctcatccgggccggacgctccgtctcaacaagtggatgacaaagctgatcgaacc
agcgctcctgcccaggcgacagccgtagcctctgtcgtggcaactgatctcgctaccaat
gcagtatcagctcctcacgtggcagagccagagaaggagccggcattcaaagagtcctca
gccgaagaagcgcccagcaccaagcctgtatcaggtcagaccacgtcagaatctgtttcc
gaacctgtaaagtcaaaattgactaacgtcgaggattcagagattgcctctgacgcaata
acgtccgctttgcctgagaacaagcccgttgaaccaacgctgcttgcaacagacgctaca
gatgcgaatctcacttccgttgacgcggatggtcaaactgcttccgaggacaagcccaca
aggggcgccgatcaagaatcagcgaacctgcctgctcaggccaagtcggaaaaaggtgaa
gccctcaattcgaatccaattgagcaggtcgcggcagcctccagcgcagagactcgcgac
gtgacgtcacaaggcgaatcatcagtagaggaatcggcagtagaacagacggtacctgaa
aggcagatagactctcaggtcaatcatgtcgctgatacggctgaatctgatgcgtctgaa
tcaccaatcaggctcgctagcgaggagacgacacaaacggaggaaattcgtgtcagcaat
agcgtctctaaaggatcgagaagcaattcgaatattggcgaactcaacgatgcagaccgt
gaaacactccacgcaatcatcgaatccgcaggtctgaagtgggttgaaagtaaccctgaa
cgggttgctcaagccaaagaagcctcatccggttcaccaacccgtctggggcgtgaacca
aggcagattgtcaaagcagagaatcaggaactcgtgcaagtagaaactcgccagcacgcc
tga
DBGET
integrated database retrieval system
