Orrella marina: DBV39_14200
Help
Entry
DBV39_14200 CDS
T05532
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
boz
Orrella marina
Pathway
boz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
boz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DBV39_14200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boz03021
]
DBV39_14200 (rpoC)
03400 DNA repair and recombination proteins [BR:
boz03400
]
DBV39_14200 (rpoC)
Enzymes [BR:
boz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DBV39_14200 (rpoC)
Transcription machinery [BR:
boz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DBV39_14200 (rpoC)
DNA repair and recombination proteins [BR:
boz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DBV39_14200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AWB34680
UniProt:
A0A2R4XLK3
LinkDB
All DBs
Position
complement(3099947..3104197)
Genome browser
AA seq
1416 aa
AA seq
DB search
MRALLDLFKQVSHDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRAQIMSDDDFLAKTEEYGDEFKALM
GAEAVRELLRSIDIDREVETLRGELKATSSEAKIKKISKRLKVIEGFQKSGIKPDWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYASRERINGKGEGMFFTDVAEVQRAYDNR
EVELQSRITVRLKQWSHDNHGEWVSEIKRFETTVGRALLSEILPKGLPFDNLNRSLKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFALATRGGISIAMQDMLIPDVKHEILAQASSE
VKEIDKQYSSGLVTTQERYNNVVDIWGKAGDRVGKAMMEQLATEPVLDRHGKEARQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITESDCGTSQGYAMKALLEGGEVIEPLRERIL
GRVAAVDIVNPDTQETAISAGTLLDEDMVDYIDRLGVDEVRVRTPLTCETRHGLCAHCYG
RDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAMANSVETKSAGTVRF
ASSMRYVTNPKGERVAISRSGEIVIYGDNDRERERHKVPYGATLQVNDGDITKAGSRLAT
WDPLTRPIVSEYAGTVRFENIEEGVTVARQLDDITGLSTLVVITPKTRGGKTMQRPQIKL
VGENGEDVKIAGTDHPVNISFPVGALITVRDGQEVRIGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDMDGVSHEFLIAKEKQVLVHDG
QVVNKGETIVDGPADPHDILRLQGIERLATYVVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVHIVDAGDTSFIPGEQVERSELLNENDRVVADGKLPATYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMAYHDARREKETTEARERE
AARALANPFEETPVSAGDILEGDPPSEGMDGGLPEE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgagagcgctactcgaccttttcaaacaggtatctcacgacgagcaatttgatgccatc
aaaatcggcattgcgtcgccagagaaaattcgctcatggtcttatggagaagttcgtaag
ccagagaccatcaactaccggacgttcaaaccagaacgtgatggtcttttctgctccaaa
atctttggccctatcaaggactacgagtgcttgtgtggcaagtacaaacgtctgaaacat
cgcggtgtgatttgcgagaagtgtggcgttgaggtaactgttgcgaaagtgcgacgtgag
cgaatgggccatatcgagctggcaagtcctgttgcgcacatctggtttttgaagagtctg
ccgtcccgtctcggaatggttctcgatatgactttgcgcgatatcgagcgagtgttgtat
ttcgaggcatggtgtgtgattgagcccggaatgacgccgctcaagcgtgctcagatcatg
tctgatgatgactttcttgcaaagactgaagagtacggtgacgagttcaaggcactcatg
ggtgccgaggctgttcgtgagcttcttcgctcgatcgatattgatcgtgaggtagaaacc
ttgcgcggagagctgaaagccacgagctcagaagcgaagatcaagaagatttcaaagcgc
ctcaaggttatcgaagggttccagaagtctggtatcaagccggactggatggtcatggaa
gtactcccagtgcttcctcccgatctgcgtccacttgttcctctggatggcggccgattt
gcgacgtctgatctgaacgatctttaccgtcgtgtcatcaaccgcaacaatcgtctgaag
cgattgctcgagttgaaagcacccgagatcatcctgcgtaacgaaaagcggatgcttcag
gagtcggttgactcgttgctggacaacggtcgtcgtggcaaggccatgacaggtgcaaac
aagcgccagttgaagtcccttgccgacatgattaaaggcaagagcggtcgattccggcaa
aatttgctgggtaaacgagtcgactactcgggtcgttccgtgattgtggtcggtccaacc
ctcaagctgcatcagtgtggccttccaaaactgatggcgctggagttgttcaagccgttc
atcttcaatcgactggagatgatgggcctggcgacgaccatcaaggcagcaaagaagctg
gtggaaagccaggagccggttgtatgggacattctggaagaggtgattcgcgaacatccg
gtcatgctcaaccgtgcgccgactcttcaccgccttggtattcaggcgtttgaacctgtt
ctgatagaaggcaaggcgattcaactgcatccgctcgtctgcgctgcatttaacgctgac
tttgacggcgaccagatggccgttcacgtacctctttcgcttgaggcacagcttgaagcc
cgtacgctcatgcttgcatcgaacaacgtcctgttccccgcaaacggtgagccttcgatt
gttccgtcgcaggatatcgtgctcggtctctattatgcgtcccgagagcggatcaatggc
aagggcgaaggcatgttctttacggacgttgccgaagtacagcgagcctacgacaatcgc
gaagtcgagttgcaaagccgtatcactgttcggctcaagcaatggagtcacgataaccac
ggcgagtgggtatccgagatcaagcgattcgagacgaccgtcggtcgcgcattgctctct
gaaatccttccgaaaggtctgcctttcgataacctcaaccgttcgctgaagaagaaggag
atctcacgtctgatcaaccagtctttccgtcgttgcggtttgcgcgataccgtgattttt
gcggataagttgatgcagtcgggcttcgcgctcgcaactcgtggcggcatttccattgcg
atgcaggacatgttgatccctgacgtcaagcatgagattcttgcgcaggcgtcttctgaa
gttaaagagattgacaagcagtactcatccggtctcgtgaccacccaggaacgctacaac
aacgtagttgatatctggggcaaggcaggcgatcgcgtaggcaaagcaatgatggaacag
cttgcgaccgagccagtgcttgatcgccacggaaaggaggcccggcaggagtcattcaat
tccatctatatgatggcagactcaggtgctcgtggttccgcagcacagattcgccagctt
gcgggaatgcgcggtctgatggcaaaacctgatggatccattatcgagacaccaatcaca
gcaaacttccgtgaaggcttgaacgtacttcagtacttcatttcgacccacggtgctcgt
aaggggctggccgataccgcacttaaaacagcgaactccggatacctgacacgccgcctg
gtagacgtgacccaggatctcgtaatcacagagagcgattgcggcacctcgcagggctat
gccatgaaggcgctcctcgagggtggcgaagtgatcgaacctttgcgtgagcgaattctc
ggtcgcgtagctgcagtggatattgtgaatccggacacgcaggaaacagcgatttctgca
ggtacgctgcttgacgaggacatggttgactacattgaccgtctcggtgttgacgaggtc
cgtgtacggaccccactgacttgcgagacccgtcacggtctgtgcgcacactgctacgga
cgtgaccttggtcgcggttcgctcgtgaatgtgggtgaagccgttggtgtgattgccgct
caatcgatcggtgagcccggtacgcagttgacgatgcgtacgttccacatcggtggggct
gcctcgcgtgcggcgatggcaaacagcgttgaaacgaagtcggccggaacggtacgcttt
gccagctcaatgcgttatgtcaccaacccgaaaggtgagcgtgttgcgatttcgcgttct
ggcgaaatcgtgatctacggagataacgatcgggaacgtgagcgtcacaaggtaccgtat
ggtgctacgttgcaggtcaacgacggagacatcacaaaggctggttcacgtctcgcaaca
tgggatccgctgactcgaccgattgtgtcagagtatgctggcacggtcagattcgagaat
attgaagaaggcgtgacggttgcgcgtcagctggacgacattacgggattgtctacgctt
gttgtcatcacccccaagacgcgcggtggaaagaccatgcagcgcccacagatcaagttg
gtcggtgagaacggtgaggatgtgaagattgcagggacagatcacccagtcaatatttca
ttccctgtcggcgcactgattaccgttcgtgatggacaagaagttcgaatcggtgaagta
cttgcccgtattccgcaggaatcacagaagacccgtgacattacaggtggtctgccgcgt
gtggccgaattgttcgaagctcgttcaccgaaagacgctggcatgcttgccgaggtgact
ggcacggtctcctttggtaaggatacgaagggcaagcagcgtctggtcatcactgacatg
gatggtgtttctcacgagttcctcattgcaaaagagaagcaggtgctggttcacgatggc
caagtcgtgaataaaggcgagacaatcgttgacggtcctgcggatccacacgacatcctt
cgcctgcaaggtatcgagcgcctcgcaacttacgttgtcgatgaggtccaggacgtttat
cgcttgcaaggcgtgaagattaacgacaagcacattgaggtgattgttcgtcaaatgctg
cgtcgtgtgcatatcgtggatgctggagatacctccttcatccctggagagcaggtagag
cgttcggagttgctcaacgagaacgatcgggtcgtggcggacggaaagcttcctgctacc
tacgacaacgttctcctcggtattacaaaggcttctctgtcgacagactcgttcatctct
gcagcatcgttccaggaaacaactcgcgtgctgaccgaagcagcgatcatgggcaaacgc
gatgacctgcgtgggttgaaagagaacgtgatcgttggacgacttattcctgctggaacg
ggtatggcctaccacgatgctcgtcgcgagaaggaaaccactgaggcgagagagcgagaa
gcagctcgtgcactggcgaacccctttgaggagacaccggtttcagccggcgatattctc
gaaggagatcctccatccgagggtatggatggcggattgccagaggagtaa
DBGET
integrated database retrieval system
