Orrella marina: DBV39_18320
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Entry
DBV39_18320 CDS
T05532
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
boz
Orrella marina
Pathway
boz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBV39_18320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boz03019
]
DBV39_18320
Enzymes [BR:
boz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBV39_18320
Messenger RNA biogenesis [BR:
boz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBV39_18320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWB35372
UniProt:
A0A2R4XNI3
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All DBs
Position
4025133..4026560
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AA seq
475 aa
AA seq
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MNSTHNTEDTTGVSSAQDLTFAQLGLHPSILSAVIETGYTNPTPIQAQALPVVMAGQDVM
GAAQTGTGKTAAFTLPILHRLMPLASASASPARHPVRAVILTPTRELADQVYESVCRYGK
NTPLRSTVVFGGVDIGAQKEALRNGCEILVATPGRLLDHLTQKTVNLSQVAILVLDEADR
MLDMGFLPDLDKIIRALPEKRQTLLFSATFSNEIRKLGRTYLNSPVELEVAKRNATADTV
SQIAYPVASENKRAAVAHVVKSRGLNQVIVFSNTKIGTGRLARELVRDGVKAESIHGDKS
QADRMKALDAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPFNAEDYVHRIGRTGRAG
ASGDAISFYTPQEEKLLVEIEKLTRKPIERGQLDLPRPAPRARKPDYSGASRSSGSTGRY
TKPVDDFFLKPYEPPPAPVKPKPASAKDDADASIRRVASVGVLLAGLGKPKDPEQ
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaattccacacacaacactgaagacacaacaggcgtttcctcggcgcaggatctgact
tttgcgcaattgggactgcatccctcgatattgagtgcagtaatcgagacagggtacacg
aacccgacaccgattcaggcacaggccttgccggtcgtgatggctgggcaggatgtcatg
ggggcggcccagactggaacaggtaagactgctgcattcacactccctatcctgcaccgc
ctgatgccgctggccagtgccagtgcctcaccagcgcgccatccggttcgcgctgtcatt
ctcacgcctactcgtgaactggccgatcaggtctacgagagtgtttgtcgatatggcaag
aacacgcctttgcgaagtacagtcgtttttgggggtgtggacatcggggcccagaaagag
gcgcttcgcaacgggtgcgagattcttgtggcgacgccaggccggcttctggatcacctg
acccagaaaacggtcaacctgtctcaggttgccatactggttcttgacgaagctgacaga
atgcttgacatggggttcttgccggacctcgacaagatcatccgcgcgctccctgagaag
cgacaaaccttgctgttttcagcgacgttcagtaacgagatccgcaagttgggtcgtacc
tatctgaacagcccggtcgagcttgaagttgccaagcgcaacgcaaccgcagacacagtc
agtcagatcgcttacccggtcgccagcgagaataaacgggctgcggttgcccacgtcgtg
aagtcccgcgggcttaatcaggtcatcgttttttccaacaccaagattggtacgggccgt
ctggcccgtgaactggttagagacggcgtcaaggccgagtctatccacggtgacaaatcc
caggcagaccgaatgaaggcactggacgctttcaaagcgggagagcttgaagttctggtg
gctacggatgtggctgcccgaggtctggacgtggcgggcgtgccatgcgtgatcaattac
gatctgcccttcaatgcagaagattatgtgcaccgtatcgggcgcaccggtcgtgctggt
gcgtcgggcgacgcaatttctttttacacacctcaggaagagaagcttctcgtcgaaatc
gagaagctcaccagaaagccgatcgagcgaggtcagcttgacttgccgcgtcccgctccc
agggcaagaaaacctgattattcgggcgcctcccgttcaagtggatcgactggccgttac
acaaagccagtcgatgatttcttcttaaagccttacgagccaccgccagcgccggtaaaa
ccgaaaccggcctctgccaaagatgacgcagatgcatcgatcaggcgagttgcatcggtc
ggtgtgctacttgctggtctgggcaagcccaaagatcctgaacagtag
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