KEGG   Bordetella parapertussis 12822: BPP2401
Entry
BPP2401           CDS       T00140                                 
Name
(GenBank) putative exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
bpa  Bordetella parapertussis 12822
Pathway
bpa03030  DNA replication
bpa03430  Mismatch repair
bpa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bpa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BPP2401
   03430 Mismatch repair
    BPP2401
   03440 Homologous recombination
    BPP2401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpa03032]
    BPP2401
   03400 DNA repair and recombination proteins [BR:bpa03400]
    BPP2401
Enzymes [BR:bpa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BPP2401
DNA replication proteins [BR:bpa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BPP2401
DNA repair and recombination proteins [BR:bpa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BPP2401
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2 DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: CAE37698
UniProt: A0ABU5X5U7 Q7W7V8
LinkDB
Position
2567848..2568591
AA seq 247 aa
MPQMSYILYKTCLAAHRGLSRRRMPVGPAGRCFYCCFGINMAYFRRYTTPHPYGQTLRAG
AAAGRASAARDGLRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVR
TDGRVPPFISRLTGITQAEVERDGVPVRQAFGDFLDFIEGGPLFFHNASFDRRFLQAAAD
RTGLPFEAQTHCTLMLARQAWPELPSHKLNVLARHLGASEPTHRALADVRTTVAVALAAR
ARLAAQG
NT seq 744 nt   +upstreamnt  +downstreamnt
atgccgcaaatgtcttatatcttatataagacttgcctggcagcacatcggggcctatcc
cggcgtagaatgcccgttggacccgcagggcgttgtttttattgttgttttggtatcaat
atggcctatttccgtcgctacaccacgccccatccctatgggcagaccctgcgcgctggc
gccgcggccggccgcgccagcgccgcgcgcgacggcttgcgggcgctggatgggccgttc
gtggtggccgacctggaaaccaccgggctgtccgttgccacgtgcgaaatcctcgaattc
gccgccgtgcgcgtcagcgcatgcgggcagatcgagcgcgagttcacccaggtggtgcgc
accgacggcagggtgccgccgttcatttcgcgcctgaccggcatcacccaggccgaagtc
gagcgcgatggcgtgccggtgcggcaggcgttcggcgacttcctcgacttcatcgagggc
gggccgctgtttttccataacgcttcgttcgatcgccgcttcctgcaggccgcggccgat
cgcaccggcctgccgttcgaggcgcagacccattgcacgctgatgctggcgcgccaggcc
tggcccgagctgccgtcgcacaagctgaacgtgctggcccgccatctcggcgcgtccgag
ccgacccaccgggccctggccgacgtgcgcaccaccgtggccgtggcgttggctgcgcgt
gcgcggctggcggcgcagggctga

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