Bordetella parapertussis 12822: BPP2887
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Entry
BPP2887 CDS
T00140
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
bpa
Bordetella parapertussis 12822
Pathway
bpa02020
Two-component system
bpa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BPP2887 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BPP2887 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpa03021
]
BPP2887 (rpoN)
Transcription machinery [BR:
bpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BPP2887 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF3208
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CAE38180
UniProt:
Q7W6L7
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All DBs
Position
3092986..3094395
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AA seq
469 aa
AA seq
DB search
MSHVLQDLRLRQQTTLAPRLQQSIHLLQMSALEFTTTVQQALATNPFLEDADETEAQDDA
PAPPAASEPPATSEPPPEPPSYAGDYPTRSAAAQPGVASDAAAWVPATLSLHERLSQALG
AYVLSERDRALAEFIVDGLDDDGYLRQELAQLAGVADFDPPPDASEWQAALHLVQQLDAP
GLAARDLPECLALQIRACSRLDPAVRDAALAIVAAHLPRLARSDYPGMRRALRCSEPVLR
QACGVIRGLDPKPGRRYAHEPPSYVVPDVVVSKQRQQWLVVPNRGAMPHARLHQAYADLF
RRARMDERSPMAQELQEARWLVRNVEQRYATIRRVAEAIVQRQQMFFEFGQIALRPLMLR
EVADELEMHESTVSRATANKYMSTPRGVFEFRHFFSRELSTESGGTCSAAAVRALIREYI
DAEDPRMPLSDVTLAKRLAGDGIVVARRTVSKYRLQLRLPAADTRRQYY
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ttgagccacgtcctgcaggatctgcggctgcgccagcaaaccacgctggcgccacgcctg
cagcagtccattcatctgctgcaaatgtcggcgctggagttcaccacgacggtgcagcag
gccctggcgaccaatccgttcctggaggacgccgacgagaccgaagcgcaggacgacgcg
ccggcgccgcccgcggcgtccgagccgcccgcgacatccgagccgccgcccgagccgccc
tcctatgccggcgactatcccacgcgcagcgccgccgcccagcctggcgtggccagcgac
gcggcggcctgggtgccggccaccctgagcctgcacgaacgcctgtcgcaggcgctgggc
gcctatgtgctgagcgaacgcgaccgtgcgctggccgagttcatcgtggatggactggat
gacgacggctacctgcggcaggaattggcccaattggccggcgtcgccgatttcgacccg
ccgcccgacgccagcgaatggcaggcggcgctgcacctggtccagcaactcgatgcgccg
ggcctggccgcgcgcgacctgcccgaatgcctggccctgcagatccgcgcctgtagccgg
ctcgatccggccgtgcgcgacgccgccctggccatcgtcgccgcccacctgccgcgcctg
gcgcgcagcgattaccccggcatgcggcgcgcgctgcgctgcagcgaaccggtgttgcgc
caggcgtgcggggtgatccgcggcctcgaccccaagcccggccgccgctatgcgcacgaa
ccgcccagctacgtcgtgccggatgtggtggtcagcaaacagcgccagcaatggctggtg
gtgccgaatcggggcgccatgccgcatgcccggctgcaccaggcctatgccgacctgttc
cggcgcgcccgcatggacgagcgcagcccgatggcgcaggagctgcaggaagcccgttgg
ctggtgcgcaatgtcgagcaacgctacgccaccatccggcgcgtggccgaggccatcgtg
cagcgccagcagatgttcttcgagttcggccagatcgcgctgcggccgctgatgctgcgc
gaggtggccgacgagctggagatgcacgagtccacggtctcgcgcgccaccgccaacaag
tacatgtcgacgccgcgcggggtgttcgagttccgccattttttctcgcgcgaactgagc
accgaatcgggcggcacgtgttcggccgcggccgtgcgcgcgctgatccgcgaatacatc
gacgcggaagacccgcgcatgcccttgtcggatgtgaccctggccaaacggctggccggc
gacggcatcgtggtggcgcgccgcacggtgtccaagtaccggctgcagctgcgcctgccc
gccgccgacacgcgccgccagtactactga
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